Gene detail

Detailed information of OS493_034059-T1 in Lophelia pertusa

Genomic Location: scaffold_280:275741...278616
NR annotation: KAJ7370130.1, DnaJ sub C member 15 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBN8	Mitochondrial import inner membrane translocase subunit TIM14 OS=Bos taurus OX=9913 GN=DNAJC19 PE=3 SV=3
Q9CQV7	Mitochondrial import inner membrane translocase subunit TIM14 OS=Mus musculus OX=10090 GN=Dnajc19 PE=1 SV=3
Q96DA6	Mitochondrial import inner membrane translocase subunit TIM14 OS=Homo sapiens OX=9606 GN=DNAJC19 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009207 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_034059-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12763 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001405 all species →	Cellular Component	PAM complex, Tim23 associated import motor	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09539	DNAJC19; DnaJ homolog subfamily C member 19	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034059-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

127.1Max TPM

38.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.22	26.52
polyp at pH7 6	18	18	23.42	35.05
coral polyp · control treatment	16	16	43.97	116.51
coral polyp · oil and dispersant treatment	16	16	66.63	127.09
coral polyp · oil treatment	16	16	37.28	55.27
coral polyp · dispersant treatment	16	16	52.11	121.61
Polyp	10	10	31.43	46.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.81
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.63
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	46.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	42.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	38.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	35.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.