Gene detail

Detailed information of OS493_034073-T1 in Lophelia pertusa

Genomic Location: scaffold_280:406304...407134
NR annotation: KAJ7370144.1, protein of unknown function (DUF4476) [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011045 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14771 all species →	DUF4476	Domain of unknown function (DUF4476)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028011 all species →	Domain	Domain of unknown function DUF4476	Interproscan
IPR042616 all species →	Family	Proline and serine-rich protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14880 all species →	PROLINE AND SERINE-RICH PROTEIN 1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_034073-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034073-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034073-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

472.7Max TPM

119.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	56.47	84.68
polyp at pH7 6	18	18	55.64	90.05
coral polyp · control treatment	16	16	123.26	179.47
coral polyp · oil and dispersant treatment	16	16	222.94	379.77
coral polyp · oil treatment	16	16	106.35	145.30
coral polyp · dispersant treatment	16	16	208.86	472.72
Polyp	10	10	53.03	75.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.51
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.19
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	160.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	158.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	153.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	379.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	352.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	296.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	253.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	251.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	237.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	230.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	228.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	222.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	207.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	191.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	160.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	145.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	144.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	143.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	136.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	131.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	472.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	315.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	300.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	278.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	253.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	247.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	240.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	197.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	181.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	166.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	154.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	75.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	73.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	72.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	70.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	61.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	54.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.