Gene detail

Detailed information of OS493_034074-T1 in Lophelia pertusa

Genomic Location: scaffold_280:410500...412305
NR annotation: KAJ7370145.1, hypothetical protein OS493_034074 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BMC1	V-type proton ATPase subunit G 3 OS=Mus musculus OX=10090 GN=Atp6v1g3 PE=1 SV=1
O75348	V-type proton ATPase subunit G 1 OS=Homo sapiens OX=9606 GN=ATP6V1G1 PE=1 SV=3
Q9CR51	V-type proton ATPase subunit G 1 OS=Mus musculus OX=10090 GN=Atp6v1g1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009164 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03179 all species →	V-ATPase_G	Vacuolar (H+)-ATPase G subunit	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005124 all species →	Family	Vacuolar (H+)-ATPase G subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12713 all species →	VACUOLAR ATP SYNTHASE SUBUNIT G	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016471 all species →	Cellular Component	vacuolar proton-transporting V-type ATPase complex	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02152	ATPeV1G, ATP6G; V-type H+-transporting ATPase subunit G	-	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034074-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

251.5Max TPM

105.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	102.70	163.77
polyp at pH7 6	18	18	121.90	251.49
coral polyp · control treatment	16	16	105.28	136.88
coral polyp · oil and dispersant treatment	16	16	110.12	133.96
coral polyp · oil treatment	16	16	106.44	155.76
coral polyp · dispersant treatment	16	16	67.41	92.70
Polyp	10	10	128.26	188.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	158.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	114.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.62
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	251.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	217.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	193.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	180.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	112.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.48
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	136.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	107.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	107.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.95
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	155.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	126.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.40
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	188.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	182.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	149.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	135.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	118.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	107.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	106.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	99.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	98.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	95.50

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.