Gene detail

Detailed information of OS493_034106-T1 in Lophelia pertusa

Genomic Location: scaffold_281:266051...273241
NR annotation: KAJ7352755.1, Store-operated calcium entry-associated regulatory factor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F7C1E2	Store-operated calcium entry-associated regulatory factor OS=Xenopus tropicalis OX=8364 GN=saraf PE=3 SV=2
Q0IHF9	Store-operated calcium entry-associated regulatory factor OS=Xenopus laevis OX=8355 GN=saraf PE=2 SV=2
Q6AYN2	Store-operated calcium entry-associated regulatory factor OS=Rattus norvegicus OX=10116 GN=Saraf PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008535 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06682 all species →	SARAF	SOCE-associated regulatory factor of calcium homoeostasis	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009567 all species →	Family	Store-operated calcium entry-associated regulatory factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15929 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:2001256 all species →	Biological Process	regulation of store-operated calcium entry	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26410	SARAF; store-operated calcium entry-associated regulatory factor	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034106-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

156.6Max TPM

35.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.40	42.03
polyp at pH7 6	18	16	14.69	40.85
coral polyp · control treatment	16	16	47.30	81.74
coral polyp · oil and dispersant treatment	16	16	68.13	156.57
coral polyp · oil treatment	16	16	36.59	75.06
coral polyp · dispersant treatment	16	16	51.90	144.12
Polyp	10	10	11.82	26.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.79
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.77
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.08
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	26.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.