Gene detail

Detailed information of OS493_034126-T1 in Lophelia pertusa

Genomic Location: scaffold_281:471893...474766
NR annotation: KAJ7352775.1, hypothetical protein OS493_034126 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15105	Glutamine synthetase OS=Mus musculus OX=10090 GN=Glul PE=1 SV=6
P09606	Glutamine synthetase OS=Rattus norvegicus OX=10116 GN=Glul PE=1 SV=3
Q9QY94	Glutamine synthetase OS=Acomys cahirinus OX=10068 GN=GLUL PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002165 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00120 all species →	Gln-synt_C	Glutamine synthetase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008146 all species →	Domain	Glutamine synthetase, catalytic domain	Interproscan
IPR014746 all species →	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan
IPR050292 all species →	Family	Glutamine Synthetase	Interproscan
IPR008147 all species →	Domain	Glutamine synthetase, N-terminal domain	Interproscan
IPR027302 all species →	Conserved_site	Glutamine synthetase, N-terminal conserved site	Interproscan
IPR036651 all species →	Homologous_superfamily	Glutamine synthetase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20852 all species →	GLUTAMINE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004356 all species →	Molecular Function	glutamine synthetase activity	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006542 all species →	Biological Process	glutamine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034126-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034126-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

842.4Max TPM

247.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	139.18	269.23
polyp at pH7 6	18	18	145.34	199.51
coral polyp · control treatment	16	16	251.01	426.76
coral polyp · oil and dispersant treatment	16	16	284.89	563.67
coral polyp · oil treatment	16	16	213.48	477.82
coral polyp · dispersant treatment	16	16	544.88	842.42
Polyp	10	10	139.81	219.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	269.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	261.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	193.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	187.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	137.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	136.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	130.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	109.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	199.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	191.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	173.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	168.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	167.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	154.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	152.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	152.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	149.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	143.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	139.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	132.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	426.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	414.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	298.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	294.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	292.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	265.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	252.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	239.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	233.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	231.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	231.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	211.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	199.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	154.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	563.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	493.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	379.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	375.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	325.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	312.42
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	302.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	294.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	245.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	220.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	217.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	214.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	159.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	145.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	477.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	344.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	296.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	252.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	237.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	226.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	206.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	190.92
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	180.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	179.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	178.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	167.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	144.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	842.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	702.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	676.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	673.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	650.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	619.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	608.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	577.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	563.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	555.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	541.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	431.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	426.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	372.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	309.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	165.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	219.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	191.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	185.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	151.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	136.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	135.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	122.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	91.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	85.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	78.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.