Gene detail

Detailed information of OS493_034137-T1 in Lophelia pertusa

Genomic Location: scaffold_282:295884...299274
NR annotation: KAJ7321750.1, hypothetical protein OS493_034137 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JHF0	Gamma-secretase subunit PEN-2 OS=Danio rerio OX=7955 GN=psenen PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010243 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10251 all species →	PEN-2	Presenilin enhancer-2 subunit of gamma secretase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019379 all species →	Family	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_034137-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_034137-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034137-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034137-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

308.7Max TPM

83.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	69.67	115.01
polyp at pH7 6	18	18	81.00	136.09
coral polyp · control treatment	16	16	83.74	191.23
coral polyp · oil and dispersant treatment	16	16	91.94	117.13
coral polyp · oil treatment	16	16	78.80	117.82
coral polyp · dispersant treatment	16	16	53.66	121.20
Polyp	10	10	149.06	308.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.17
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	136.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.46
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.70
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.82
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	308.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	194.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	182.27
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	178.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	162.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	124.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	110.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	87.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	83.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	59.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.