Gene detail

Detailed information of OS493_034161-T1 in Lophelia pertusa

Genomic Location: scaffold_283:227850...229960
NR annotation: KAJ7389027.1, hypothetical protein OS493_034161 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24235 all species →	NEUROPEPTIDE Y RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034161-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034161-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

43.2Max TPM

9.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.05	9.31
polyp at pH7 6	18	16	6.81	14.50
coral polyp · control treatment	16	16	16.24	43.24
coral polyp · oil and dispersant treatment	16	16	12.97	37.59
coral polyp · oil treatment	16	16	11.62	36.87
coral polyp · dispersant treatment	16	16	9.77	22.38
Polyp	10	10	2.85	5.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.48
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.