Gene detail

Detailed information of OS493_034177-T1 in Lophelia pertusa

Genomic Location: scaffold_283:426474...433465
NR annotation: KAJ7389042.1, hypothetical protein OS493_034177 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001065 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_034177-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan
IPR026765 all species →	Family	Transmembrane protein 163	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31937 all species →	TRANSMEMBRANE PROTEIN 163	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034177-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034177-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

21.3Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.87	14.68
polyp at pH7 6	18	16	7.46	14.59
coral polyp · control treatment	16	16	7.93	21.26
coral polyp · oil and dispersant treatment	16	15	6.00	14.32
coral polyp · oil treatment	16	16	7.61	18.36
coral polyp · dispersant treatment	16	15	6.31	13.55
Polyp	10	9	6.17	12.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.67
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.