Gene detail

Detailed information of OS493_034178-T1 in Lophelia pertusa

Genomic Location: scaffold_283:446414...461110
NR annotation: KAJ7389043.1, hypothetical protein OS493_034178 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001065 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026765 all species →	Family	Transmembrane protein 163	Interproscan
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31937 all species →	TRANSMEMBRANE PROTEIN 163	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14694	SLC30A11, ZNT11; solute carrier family 30 (zinc transporter), member 11	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034178-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

37.2Max TPM

12.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.50	13.39
polyp at pH7 6	18	16	8.63	16.53
coral polyp · control treatment	16	16	19.06	37.16
coral polyp · oil and dispersant treatment	16	16	16.49	29.81
coral polyp · oil treatment	16	16	16.70	33.76
coral polyp · dispersant treatment	16	16	12.56	20.84
Polyp	10	10	6.14	12.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.36
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.