Detailed information of OS493_034226-T1 in Lophelia pertusa

Genomic Location: scaffold_285:62537...64585
NR annotation: KAJ7376490.1, Retinoid isomerohydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9I993Beta,beta-carotene 15,15'-dioxygenase OS=Gallus gallus OX=9031 GN=BCO1 PE=1 SV=1
Q8LIY8Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CCD8B PE=1 SV=1
Q8VY26Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCD8 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001128 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03055
all species →		RPE65Retinal pigment epithelial membrane proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004294
all species →		FamilyCarotenoid oxygenaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10543
all species →		BETA-CAROTENE DIOXYGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0010436
all species →		Molecular Functioncarotenoid dioxygenase activityInterproscan
GO:0016121
all species →		Biological Processcarotene catabolic processInterproscan
GO:0016702
all species →		Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_034226-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_034226-T1 global co-expression network
TOP