Gene detail

Detailed information of OS493_034259-T1 in Lophelia pertusa

Genomic Location: scaffold_285:369802...371807
NR annotation: KAJ7376522.1, hypothetical protein OS493_034259 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004495 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17218 all species →	CBX7_C	CBX family C-terminal motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033773 all species →	Conserved_site	CBX family C-terminal motif	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_034259-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_034259-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034259-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034259-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

98.9Max TPM

47.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	51.60	85.08
polyp at pH7 6	18	18	49.56	92.36
coral polyp · control treatment	16	16	55.19	80.44
coral polyp · oil and dispersant treatment	16	16	41.25	57.26
coral polyp · oil treatment	16	16	49.79	61.71
coral polyp · dispersant treatment	16	16	30.89	54.00
Polyp	10	10	59.64	98.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	98.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	82.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	78.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	62.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	58.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	56.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	53.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	47.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	32.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	24.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.