Detailed information of OS493_034289-T1 in Lophelia pertusa

Genomic Location: scaffold_286:234281...242172
NR annotation: KAJ7370080.1, hypothetical protein OS493_034289 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6R5N8Toll-like receptor 13 OS=Mus musculus OX=10090 GN=Tlr13 PE=1 SV=1
Q6QNU9Toll-like receptor 12 OS=Mus musculus OX=10090 GN=Tlr12 PE=1 SV=1
Q9WV82Toll-like receptor 4 OS=Cricetulus griseus OX=10029 GN=TLR4 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000113 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00047
all species →		igImmunoglobulin domainDomainInterproscan
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF01582
all species →		TIRTIR domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR013151
all species →		DomainImmunoglobulinInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR017241
all species →		FamilyToll-like receptorInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR000157
all species →		DomainToll/interleukin-1 receptor homology (TIR) domainInterproscan
IPR035897
all species →		Homologous_superfamilyToll/interleukin-1 receptor homology (TIR) domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24365
all species →		TOLL-LIKE RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0002224
all species →		Biological Processtoll-like receptor signaling pathwayInterproscan
GO:0004888
all species →		Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0006954
all species →		Biological Processinflammatory responseInterproscan
GO:0006955
all species →		Biological Processimmune responseInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0038023
all species →		Molecular Functionsignaling receptor activityInterproscan
GO:0007165
all species →		Biological Processsignal transductionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_034289-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_034289-T1 global co-expression network
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