Gene detail

Detailed information of OS493_034297-T1 in Lophelia pertusa

Genomic Location: scaffold_286:301325...303718
NR annotation: KAJ7370086.1, Marginal zone B and B1-cell-specific protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D8I1	Marginal zone B- and B1-cell-specific protein OS=Mus musculus OX=10090 GN=Mzb1 PE=1 SV=2
Q561R0	Marginal zone B- and B1-cell-specific protein OS=Rattus norvegicus OX=10116 GN=Mzb1 PE=2 SV=1
Q8WU39	Marginal zone B- and B1-cell-specific protein OS=Homo sapiens OX=9606 GN=MZB1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008818 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11938 all species →	DUF3456	TLR4 regulator and MIR-interacting MSAP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021852 all species →	Domain	Domain of unknown function DUF3456	Interproscan
IPR052682 all species →	Family	Marginal zone B- and B1-cell-specific protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15881 all species →	MARGINAL ZONE B- AND B1-CELL-SPECIFIC PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0030888 all species →	Biological Process	regulation of B cell proliferation	Interproscan
GO:0034663 all species →	Cellular Component	endoplasmic reticulum chaperone complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034297-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034297-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

84.1Max TPM

33.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.55	48.93
polyp at pH7 6	18	18	34.62	56.26
coral polyp · control treatment	16	16	41.03	55.96
coral polyp · oil and dispersant treatment	16	16	30.20	51.29
coral polyp · oil treatment	16	16	36.73	49.70
coral polyp · dispersant treatment	16	16	28.68	51.02
Polyp	10	9	33.58	84.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.13
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.63
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.97
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.26
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	84.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	74.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	43.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	32.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.