Detailed information of OS493_034298-T1 in Lophelia pertusa

Genomic Location: scaffold_286:304091...314249
NR annotation: KAJ7370087.1, Vesicle-mediated ER to Golgi transport protein [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9W3N6General vesicular transport factor p115 OS=Drosophila melanogaster OX=7227 GN=p115 PE=1 SV=2
Q9Z1Z0General vesicular transport factor p115 OS=Mus musculus OX=10090 GN=Uso1 PE=1 SV=2
P41542General vesicular transport factor p115 OS=Rattus norvegicus OX=10116 GN=Uso1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004575 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_034298-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10013
all species →		GENERAL VESICULAR TRANSPORT FACTOR P115Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0005795
all species →		Cellular ComponentGolgi stackInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0012507
all species →		Cellular ComponentER to Golgi transport vesicle membraneInterproscan
GO:0045056
all species →		Biological ProcesstranscytosisInterproscan
GO:0048211
all species →		Biological ProcessGolgi vesicle dockingInterproscan
GO:0061025
all species →		Biological Processmembrane fusionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_034298-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_034298-T1 global co-expression network
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