Gene detail

Detailed information of OS493_034346-T1 in Lophelia pertusa

Genomic Location: scaffold_288:195959...203594
NR annotation: KAJ7321727.1, D-tyrosyl-tRNA(Tyr) deacylase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2T9V8	D-aminoacyl-tRNA deacylase 1 OS=Bos taurus OX=9913 GN=DTD1 PE=2 SV=1
Q8TEA8	D-aminoacyl-tRNA deacylase 1 OS=Homo sapiens OX=9606 GN=DTD1 PE=1 SV=2
Q9DD18	D-aminoacyl-tRNA deacylase 1 OS=Mus musculus OX=10090 GN=Dtd1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02580 all species →	Tyr_Deacylase	D-Tyr-tRNA(Tyr) deacylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003732 all species →	Family	D-aminoacyl-tRNA deacylase DTD	Interproscan
IPR023509 all species →	Homologous_superfamily	D-aminoacyl-tRNA deacylase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10472 all species →	D-TYROSYL-TRNA TYR DEACYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051499 all species →	Molecular Function	D-aminoacyl-tRNA deacylase activity	Interproscan
GO:0006399 all species →	Biological Process	tRNA metabolic process	Interproscan
GO:0051500 all species →	Molecular Function	D-tyrosyl-tRNA(Tyr) deacylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07560	dtd, DTD; D-aminoacyl-tRNA deacylase	EC:3.1.1.96	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034346-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

15.3Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.42	9.13
polyp at pH7 6	18	17	7.00	11.76
coral polyp · control treatment	16	16	4.93	9.65
coral polyp · oil and dispersant treatment	16	15	3.07	6.37
coral polyp · oil treatment	16	16	5.91	9.48
coral polyp · dispersant treatment	16	14	2.21	5.25
Polyp	10	10	5.29	15.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.85

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.