Gene detail

Detailed information of OS493_034379-T1 in Lophelia pertusa

Genomic Location: scaffold_289:184946...214221
NR annotation: KAJ7388990.1, hypothetical protein OS493_034379 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_034379-T1

ATGGCTGATAGTGGTCGCGAAGAAAAGCTGGCTGCGGCCAGAAAAAAGCTCAAGAAATTTCAACAAAAGCGGACGCCTTCTTCGAGTCCAGTGGTGAAAGCTGTGAAACATCGAGTAGATTGTTCTTCGATACACTCGTCGAGTTCATCGGAATCTGGAGGAGTCTCATCAACAGCAGATAACAATGTAAATATCGCTTCACATGACCCATCATCGTCACTATCACCCATAAATGGAAGCTACCTTCCAGACGAGCACATCACCCAAGCACAACAAGTATTTGACAATGAAAGAGATGTCGAGCCACTTCCCTCCAGCTCAAATGACAGAGAATACTCAACTACTGAAAAGATTAAGCAACTTTGTTCCCAAATCAATGGACTTACTGTGAGCCAGGATCAGTATATTAATGGTGAAGATCCAGTGTTTCATGAAATCAAGTCTCTTGAGAGTAGAAACCATGAGCTTGAGGATAGAGTACAGTCCTATAAGAGATCTAGCGAACAACTGAACAGTCAAGTCAATGAACAGAGAAGACAAATAATCCAATTTCAAGAACAGATAAAAAGGGAACGGACAGAGTTAGCAAACAAGCAGCTTTTAGAACAGCGATCTCTCAAAGAACAGCTTGAGGTTCATATTCAGACGATAGGAATTCTCGTTGGTGAGAAGCAGGAGCTACAAAGCACTGTGTCTCAACTGCAGAGGAAATATGAAATCAAACAAAGCGAAAACACTGAACTAACAAGCAGATTACAAACTGTTCGACAAAAAGCAGTAGAACTTGAGAAAAATTTGTCAAATGTCACTGCAAGCTGTGATAAGTACCAAGATGATGCAAAGCATCTTCGGCAAGAGAGGGATAAATACCAAACAGCGAATTACACTCAAAATCAGGAAAAGGAAGAACTATTACAACAAAATGCTGAGCTCAGAGTGAAGTTAGAATCCAAGGTTGCTGAGTGTGAAGAGTTGAATAAGACTGAATCAGAATTGTCATTCAAGCTGAAGCAGGCTCAGCTTGTTGTTCAACAGCTTTCAGGAGAACCAAACTCTTCAGCAAGCCACAAGTTAGTTGAACAACTACAAAATGAGAAAGCAGAGCTTGAAAGTAAATTAGAACAGGTTAATAACACAGTGCAAAGACTTGCCGCTGATAAAGGAGAGCTGTTACAGCAGCATGCAGAAGAAATGGACCAGTATGAGAAAAGAATAAGAAGTCTGACAGAAGAGGTGGAGTTACACGATAGAGAAAAGAGGCTTTTGATTGCACAGGAGAGTGAACTTCAAGAGAGCATGCAGAGTTTGCAGAAGGAATTGGCTGATCTGCAAGACGATGAAGCCAGTCAACAAGTGCAATCCACACAACTTGCCGCAGCTGAGATTGAGAGATTAGCGGAGGATAAACAAAGATTAGCTGAACACTTACAGCAAGAGGGCAAAGAGAATGTAAGACTTGTAAGGGACCAGGAACGTTATCTGCTGAGAATACAGGAGTTAGAGACAGCTGTGGCTCGCCTGGGAGAGGAGTCCATTGATAAAGTCACCCTCCTGGAAAGTGTCCAGAGTGACAAGGAGACCATAAGCAGGGCCTTAAAACAGAACAAGGAACTGAAGACCAAAACAGAGGAGTTGGAAGAGAGATTTATAACGATGAGTCAGGAAAACATGGAGCTCACAACAAGTTTAGAAACAGAGCAGCACATGGCTAAAGAACTAGCTGCTAAACTTAGTGATATGGGAGTTGAGCTGGAGGAGTCTAAACAACTGCTCTCTGCAAGGAATTCTGAAGTTCAGTCACTGACAGAAGAACTGCAAACTGCTTCAAACAACCTTAGAGAAGAGGTAACCAAAGGAGAAAGTTTAATTTCTTCACTCCGGGATGAACTGGATGTGTCCTCACAGCAATTCTTTGATCAGCTCAAGCAAAAGGAGTTTGAAATCTCGGCTGTTCGTGAAGAAATAGATGTGTCTTCTCACCAGCTAAGGGAACAGTTGGCCAAGAAGGACTTTGAACTGGGTTCCCTCAAGGACGAGCTTAGCCAATCAGAGGCGAGACTGACTGAACAGTTTCTTTTGAATGAAGATAGTCACGTGTATAAGAACCAAGCTGAACTCGCCAACAGTTTACAACAAGAGCTCCAGTTAGCGCAGGACACCATCAGCCATTTAACGGTGGGCAATTCTCAGCTGAAAGAAATGTTATCAAGCACTGAGAACCGCAGCAGCATGGAGCCTTCAGGGAGCGAGAGTTCAGACGAAGAAGAAACTTCCAAACCTTCTACTAAAGCCTCTGACGTGCCACATATGCACAATGGTAACACGGACAATGAAGATGGCGAGATCCACATCAAGAGGATTCCTCCAGACGTCATCCCGGTGCAGGCAACGGATCAGACTATGGAGGACACACCGCCGTACATGAACGGAGACTTTAGCGAGGGAGAGAGCCCTGTGGAGACGGACTCCAGTGAGGATATGAATATGGCGCCTCACAGGTCACCACCCCCTCCCCCTACGTCCAAATATACCAGCCAAGAGAACATGGTTGATTTACTCTCTGCATCCGTCCGTCAACTGGAGATGGAGCGGGATCAATTAGCGGACATTTTACACAGAACTCAGGATCAACAAGAAGATGACATGCTGAGATTGCAACAACATCTGGAGCTGCAGCTCAGACAGCAGCTCCAACAGCAAGGCAGACAGCTGCAAGAGCATTTCCAACAGCAGCTTCATGAGCAGCAGCAGAAGATGCTACTGATGCAGGCTGTGGTGGAGAAACAGAAAGAACAGATCGAGAGAAAAGAAGAACCAGAGCTGCCTAACATTCCTCTTGATCAGCTCGGTCAGGAGGACATATCAAATGACGCGATCAAGATGGCTTTCAGTAAACTGCAGGCGCGGTTTATGAAGTTAATGAATGAAAAAGCCTCCCTAATAGAAAGAATTCAAGAACTTGAACATGTTACAGTACAACTGTCTCATGAAACAGAGACCATCGGCGAGTACATCACTCTTTATCAAACCCAGAGGAATGCTCTTAAGTCTTACTACAAGGACCGAGAGAGAATGATCGCGCAAATGTCAAGCGAGAAAGCCAACATGCAGGACAAAATGAACCAACTACAAGACTTGGTCAAACAAATGCTGGACGAAAGGAAAGAACTGAGAATCCATCAACACCAGTTGCAAAACGTAATCAACAGCCGAATGGTGGCACACGAACACGAGGCTGTCATTTCCGCTTACCAAGATGGCGACGAGCTCGTCGTACCCCAGGCAGAAGTCAGCGTAGAAAGCGAAACGAACAGTCGTAACATGGACGATAGTGATCGATCGAGAAGCTCGTACTTCGACGAAACAGAAACTGAACTAAGTCAACTTGAAAATGATGAAGACTTAGATCAAAACGACGGCACTGCTCGTCAAATTTTACAGATTCTAGAACAGTTAGGACCTTCAGAGGAAGGTACTCGTAGAGGGTGGATATCACCTGATGTACGGAGCAGAGAGTTCTTACCTTGTAGAGCCTGTGGCGAACGCGTCCTCAGACTGTAG

Transcript

OS493_034379-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1IH00	Golgin subfamily A member 2 OS=Danio rerio OX=7955 GN=golga2 PE=2 SV=1
Q62839	Golgin subfamily A member 2 OS=Rattus norvegicus OX=10116 GN=Golga2 PE=1 SV=4
Q921M4	Golgin subfamily A member 2 OS=Mus musculus OX=10090 GN=Golga2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003970 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15070 all species →	GOLGA2L5	Putative golgin subfamily A member 2-like protein 5	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043976 all species →	Domain	Golgin subfamily A, conserved domain	Interproscan
IPR024858 all species →	Family	Golgin subfamily A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10881 all species →	GOLGIN SUBFAMILY A MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000137 all species →	Cellular Component	Golgi cis cisterna	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005801 all species →	Cellular Component	cis-Golgi network	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0032580 all species →	Cellular Component	Golgi cisterna membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20358	GOLGA2; golgin subfamily A member 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_034379-T1 global co-expression network