Detailed information of OS493_034401-T1 in Lophelia pertusa

Genomic Location: scaffold_289:370302...416070
NR annotation: KAJ7389008.1, hypothetical protein OS493_034401 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BX70Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2
Q709C8Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1
Q96RL7Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000772 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06650
all species →
VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF16910
all species →
VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan
PF16908
all species →
VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009543
all species →
DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR031642
all species →
DomainVPS13, middle RBG modulesInterproscan
IPR026847
all species →
FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR031646
all species →
DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166
all species →
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006623
all species →
Biological Processprotein targeting to vacuoleInterproscan
GO:0019898
all species →
Cellular Componentextrinsic component of membraneInterproscan
GO:0045053
all species →
Biological Processprotein retention in Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_034401-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_034401-T1 global co-expression network
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