Gene detail

Detailed information of OS493_034403-T1 in Lophelia pertusa

Genomic Location: scaffold_289:443169...475851
NR annotation: KAJ7389010.1, hypothetical protein OS493_034403 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_034403-T1

ATGGTGTTCGAGTCGTACGTGGTCAAACGTCTGAACAAATTCGCCGGCCAGTACTTTGAGAATCTCGATCCATCGCAGTTGAGGATTGGCATTTTAGGGGGAGGAGATGTCCAACTGGAAAATCTGATTCTAAAGGAGAGCGCCTTGGATGATTTAGATTTGCCAGTCAAGGTTCTGCGTGGTCATTTAGGCAAGCTTGTGCTTAAGATACCCTGGAAGAATTTGTATTCAGAACCAGTTGTTGCTGAAGTTGATGGACTGTATTTACTTGTTAGACCAAATACTGGTGTTCACTACAATGCAGAGAAAGAGGAGAAAGCCAAGCAGGAGAAGAAGCAAAGACAGTTGGATGCAGTGGAGCTCGCCAGGCAACTGGAGGAAGAGAAGAAAAAAAGTGAACCACAAAAAGATGAAAAGTCTGACAGTTTTGTTGAGAAGTTAGCCATGCAGATTGTCAAAAACCTTCAGATCTCCGTTCGCAATATTCACATACGTTATGAAGATTCTGTTACCAACCCTTCCGCCCCATTTTCTATTGGTGTTTCTTTGGAGAATTTATCAGCAAAGTCCACAGATGAGAACTGGATTCCCTCTATTGTTGGTACAAGTGTGCAAATTGTACACAAGCTTGTCAAACTTGACAGTCTTGCCTTGTACTGGAATACGAAAGACAACATTGGGCAGCTGCCGTCACAAGAGGACTGGGTGAATCAAGCCAAGGGAGGAATAGCCATCAGAACTGCACAACATTACTCTCCACCAGATTTTAAATACATTTTGCAGCCTATCTCTGCCACCACAAAAGTAAAGATGAATGTTAAGCCTGGTTCGGATTTAAGTATCCCTAAGATTTTCCTGAGCCTTGTCTTGCAAGAGATATCTCTAGTTTTGATGAGGCAGCAGTACCATGATGTGATGGAGTTACTGGAGTCCTTTGACAGAATGACCACAAATACCATGTTCAGAAAATACAAACCAAATGTCCCTCTCCATGGTCATGTCAAACAGTGGGATCTTTGCAGGCAGTACAAGGACCTGTATAAGAAGAAGTTACTGCAAGACAAACCTTCTGATGCATTACTAAAGGAGCTAGAGGCACTTGAAAGTAAACTAGATGTTTTGAATATCACAATTTGCAGACGCCAGGCTGCTTATGAGGAAGCTGCAGCTTTGAGGAAGAAGAAGATGAAAGCAGAAGAGAAGAAAAGTGGTGGATGGTTTTCAGGTTTCTGGGGCTCCAGTAAAAAGCGCAAGAAGGAGGAGGAAAAATCAGAAATTTTAACTGCAGAGCAGAAAAAAGAAGAACTGGAGAAGTTATACTTTGCTATCGGCTACAGTGATGGAGAGGTCATCACAGCATTTCCTAAGGAGTATGTGGAAAATAAAGTTTTGGTCCATTTGAAGCAAATAAGTGTGGCTTTGAGAGACGATACAGATGCCAAGTCAGTTGATGTTGCAAGACTGACTTTCCAGGACCTTTTTACAGAGCTTTCTCAAAGACCATCAGCACAAGCAATTAAGGTGACAGCAAAGGTGGACCAGATGAAGATGTTTGGTTCTGCTGCTGCTGCTGATGGAAAGATGCCTCTCATGATAACCTCACAGGATGAAAAAGCAGAAAGCCACCTTGCTCTTTTCACGGCATCCTTTGAGACCAATCCTTTAGATGGGAAGTGCGACCAGAGAGCTGAAGTGTCCTCTCAACCAGTCAAAGTTTGCTACGATGCTAACACAATAGACCATGTCATCACGTTCTTTCAGCCTCCAAAAGATGTTCATCTTCAGGAGCTCTCAGCAGCAGCATTCTCACGACTGGAAGATCTAAAGTCAGTGTCCAAAGCAAACTTGTCTTATGCAATTGAACATCACAAGAGGGAGGCACCTTTTAAGAAGACCTTAGCTTGGAGGATTTGGAATCAAAGTGTTAATGACAAGTTCGATTTTCAGACTGGAAGACGCCTTCAGATTCCTCATTGCAAAAACAGGGAGTCCAAGCTAAAGCTAGCTAAATTAGGAAGCAAAGGAGGGCCTTGGACGTTAAGCCCCAAGTTTTAA

Transcript

OS493_034403-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5H8C4	Intermembrane lipid transfer protein VPS13A OS=Mus musculus OX=10090 GN=Vps13a PE=1 SV=1
Q9BGZ0	Intermembrane lipid transfer protein VPS13A OS=Macaca fascicularis OX=9541 GN=VPS13A PE=2 SV=2
Q96RL7	Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16910 all species →	VPS13_mid_rpt	VPS13, central RBG modules	Repeat	Interproscan
PF12624 all species →	Chorein_N	VPS13-like, N-terminal	Domain	Interproscan
PF16908 all species →	VPS13_ext_chorein	Vacuolar sorting-associated protein 13, extended-chorein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031642 all species →	Domain	VPS13, middle RBG modules	Interproscan
IPR026854 all species →	Domain	Vacuolar protein sorting-associated protein 13-like, N-terminal domain	Interproscan
IPR031646 all species →	Domain	Vacuolar protein sorting-associated protein 13, extended chorein	Interproscan
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034403-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_034403-T1 global co-expression network