Gene detail

Detailed information of OS493_034412-T1 in Lophelia pertusa

Genomic Location: scaffold_290:136072...137139
NR annotation: KAJ7382521.1, hypothetical protein OS493_034412 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14939	Phospholipase D2 OS=Homo sapiens OX=9606 GN=PLD2 PE=1 SV=2
P97813	Phospholipase D2 OS=Mus musculus OX=10090 GN=Pld2 PE=1 SV=2
P70498	Phospholipase D2 OS=Rattus norvegicus OX=10116 GN=Pld2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001609 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00614 all species →	PLDc	Phospholipase D Active site motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR015679 all species →	Family	Phospholipase D family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18896 all species →	PHOSPHOLIPASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004630 all species →	Molecular Function	phospholipase D activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0060627 all species →	Biological Process	regulation of vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034412-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034412-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

121.9Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.72	4.11
polyp at pH7 6	18	16	0.98	2.36
coral polyp · control treatment	16	15	9.70	76.26
coral polyp · oil and dispersant treatment	16	16	11.11	85.08
coral polyp · oil treatment	16	16	3.96	28.63
coral polyp · dispersant treatment	16	14	20.45	121.90
Polyp	10	9	1.18	3.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.09
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.