Gene detail

Detailed information of OS493_034413-T1 in Lophelia pertusa

Genomic Location: scaffold_290:140524...141028
NR annotation: KAJ7382522.1, WD repeat-containing protein 19 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UGF1	WD repeat-containing protein 19 OS=Mus musculus OX=10090 GN=Wdr19 PE=1 SV=1
Q8NEZ3	WD repeat-containing protein 19 OS=Homo sapiens OX=9606 GN=WDR19 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003256 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_034413-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040379 all species →	Family	WD repeat-containing protein 19/dyf-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14920 all species →	OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034413-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034413-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

360.4Max TPM

87.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	92.07	153.69
polyp at pH7 6	18	18	103.21	190.73
coral polyp · control treatment	16	16	71.60	135.46
coral polyp · oil and dispersant treatment	16	16	54.52	115.76
coral polyp · oil treatment	16	16	77.03	119.94
coral polyp · dispersant treatment	16	16	59.19	282.56
Polyp	10	10	188.17	360.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	153.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	139.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	129.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	127.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	119.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.36
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.18
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	190.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	182.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	142.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	114.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	107.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.46
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.99
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	282.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	116.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.98
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	360.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	307.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	259.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	204.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	175.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	141.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	136.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	130.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	86.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	80.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.