Gene detail

Detailed information of OS493_034444-T1 in Lophelia pertusa

Genomic Location: scaffold_291:45261...57122
NR annotation: KAJ7376457.1, hypothetical protein OS493_034444 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IH88	Uncharacterized protein KIAA2013 homolog OS=Xenopus tropicalis OX=8364 PE=2 SV=1
Q6DDG2	Uncharacterized protein KIAA2013 homolog OS=Xenopus laevis OX=8355 PE=2 SV=1
Q91X21	Uncharacterized protein KIAA2013 OS=Mus musculus OX=10090 GN=Kiaa2013 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007215 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10222 all species →	DUF2152	Uncharacterized conserved protein (DUF2152)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018795 all species →	Family	Uncharacterized protein KIAA2013-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31386 all species →	UNCHARACTERIZED PROTEIN KIAA2013	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_034444-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034444-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034444-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

29.3Max TPM

16.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.97	27.25
polyp at pH7 6	18	18	16.99	29.25
coral polyp · control treatment	16	16	19.23	27.96
coral polyp · oil and dispersant treatment	16	16	15.75	27.28
coral polyp · oil treatment	16	16	17.77	26.43
coral polyp · dispersant treatment	16	16	15.29	25.40
Polyp	10	9	9.96	16.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.86
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.