Detailed information of OS493_034457-T1 in Lophelia pertusa

Genomic Location: scaffold_291:204866...212366
NR annotation: KAJ7376467.1, Acyl-coenzyme A synthetase acsm4, mitochondrial-like [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0C7M7Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Homo sapiens OX=9606 GN=ACSM4 PE=1 SV=1
Q3UNX5Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Mus musculus OX=10090 GN=Acsm3 PE=1 SV=2
Q53FZ2Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Homo sapiens OX=9606 GN=ACSM3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001421 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00501
all species →		AMP-bindingAMP-binding enzymeFamilyInterproscan
PF13193
all species →		AMP-binding_CAMP-binding enzyme C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042099
all species →		Homologous_superfamilyANL, N-terminal domainInterproscan
IPR045851
all species →		Homologous_superfamilyAMP-binding enzyme, C-terminal domain superfamilyInterproscan
IPR000873
all species →		DomainAMP-dependent synthetase/ligase domainInterproscan
IPR025110
all species →		DomainAMP-binding enzyme, C-terminal domainInterproscan
IPR051087
all species →		FamilyMitochondrial Acyl-CoA Synthetase Medium-ChainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43605
all species →		ACYL-COENZYME A SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004321
all species →		Molecular Functionfatty-acyl-CoA synthase activityInterproscan
GO:0006633
all species →		Biological Processfatty acid biosynthetic processInterproscan
GO:0006637
all species →		Biological Processacyl-CoA metabolic processInterproscan
GO:0015645
all species →		Molecular Functionfatty acid ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_034457-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034457-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
108TPM > 0
7Conditions
26.4Max TPM
8.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 8.38 16.16
polyp at pH7 6 18 16 7.94 17.57
coral polyp · control treatment 16 16 9.86 26.43
coral polyp · oil and dispersant treatment 16 16 8.32 16.80
coral polyp · oil treatment 16 16 9.54 16.99
coral polyp · dispersant treatment 16 16 7.17 15.54
Polyp 10 10 3.43 6.45

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11359511 polyp at pH7 9 not recorded not recorded not recorded - 16.16
SRR11359510 polyp at pH7 9 not recorded not recorded not recorded - 15.17
SRR11359508 polyp at pH7 9 not recorded not recorded not recorded - 10.52
SRR11359509 polyp at pH7 9 not recorded not recorded not recorded - 10.25
SRR11359494 polyp at pH7 9 not recorded not recorded not recorded - 10.20
SRR11359495 polyp at pH7 9 not recorded not recorded not recorded - 8.61
SRR11359523 polyp at pH7 9 not recorded not recorded not recorded - 7.76
SRR11359519 polyp at pH7 9 not recorded not recorded not recorded - 7.64
SRR11359499 polyp at pH7 9 not recorded not recorded not recorded - 7.47
SRR11359498 polyp at pH7 9 not recorded not recorded not recorded - 7.40
SRR11359520 polyp at pH7 9 not recorded not recorded not recorded - 7.38
SRR11359521 polyp at pH7 9 not recorded not recorded not recorded - 7.37
SRR11359522 polyp at pH7 9 not recorded not recorded not recorded - 6.95
SRR11359518 polyp at pH7 9 not recorded not recorded not recorded - 6.64
SRR11359497 polyp at pH7 9 not recorded not recorded not recorded - 6.17
SRR11359496 polyp at pH7 9 not recorded not recorded not recorded - 5.36
SRR11359506 polyp at pH7 9 not recorded not recorded not recorded - 5.17
SRR11359507 polyp at pH7 9 not recorded not recorded not recorded - 4.68
SRR11359501 polyp at pH7 6 not recorded not recorded not recorded - 17.57
SRR11359504 polyp at pH7 6 not recorded not recorded not recorded - 11.03
SRR11359500 polyp at pH7 6 not recorded not recorded not recorded - 11.02
SRR11359503 polyp at pH7 6 not recorded not recorded not recorded - 9.78
SRR11359528 polyp at pH7 6 not recorded not recorded not recorded - 9.24
SRR11359514 polyp at pH7 6 not recorded not recorded not recorded - 9.23
SRR11359502 polyp at pH7 6 not recorded not recorded not recorded - 8.99
SRR11359526 polyp at pH7 6 not recorded not recorded not recorded - 8.49
SRR11359529 polyp at pH7 6 not recorded not recorded not recorded - 8.33
SRR11359505 polyp at pH7 6 not recorded not recorded not recorded - 8.11
SRR11359524 polyp at pH7 6 not recorded not recorded not recorded - 7.56
SRR11359527 polyp at pH7 6 not recorded not recorded not recorded - 7.42
SRR11359516 polyp at pH7 6 not recorded not recorded not recorded - 7.22
SRR11359517 polyp at pH7 6 not recorded not recorded not recorded - 6.75
SRR11359515 polyp at pH7 6 not recorded not recorded not recorded - 6.38
SRR11359525 polyp at pH7 6 not recorded not recorded not recorded - 5.79
SRR11359512 polyp at pH7 6 not recorded not recorded not recorded - 0.00
SRR11359513 polyp at pH7 6 not recorded not recorded not recorded - 0.00
SRR16705972 coral polyp · control treatment coral polyp polyp control treatment SRP344271 26.43
SRR16705970 coral polyp · control treatment coral polyp polyp control treatment SRP344271 15.21
SRR16705943 coral polyp · control treatment coral polyp polyp control treatment SRP344271 14.88
SRR16705992 coral polyp · control treatment coral polyp polyp control treatment SRP344271 14.31
SRR16705989 coral polyp · control treatment coral polyp polyp control treatment SRP344271 13.33
SRR16705942 coral polyp · control treatment coral polyp polyp control treatment SRP344271 12.10
SRR16705975 coral polyp · control treatment coral polyp polyp control treatment SRP344271 12.01
SRR16705974 coral polyp · control treatment coral polyp polyp control treatment SRP344271 9.90
SRR16705957 coral polyp · control treatment coral polyp polyp control treatment SRP344271 9.69
SRR16705946 coral polyp · control treatment coral polyp polyp control treatment SRP344271 7.73
SRR16705991 coral polyp · control treatment coral polyp polyp control treatment SRP344271 5.25
SRR16705960 coral polyp · control treatment coral polyp polyp control treatment SRP344271 5.18
SRR16705971 coral polyp · control treatment coral polyp polyp control treatment SRP344271 4.02
SRR16705965 coral polyp · control treatment coral polyp polyp control treatment SRP344271 3.39
SRR16705973 coral polyp · control treatment coral polyp polyp control treatment SRP344271 2.60
SRR16705990 coral polyp · control treatment coral polyp polyp control treatment SRP344271 1.75
SRR16705944 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 16.80
SRR16705976 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 15.08
SRR16705997 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 14.76
SRR16706005 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 12.39
SRR16705994 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 11.64
SRR16705948 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 10.83
SRR16705979 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 10.78
SRR16705982 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 9.15
SRR16706004 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 7.17
SRR16705947 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 5.92
SRR16705978 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.57
SRR16705977 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.23
SRR16705996 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.19
SRR16705993 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 2.77
SRR16705945 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.66
SRR16705995 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.15
SRR16705950 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 16.99
SRR16705949 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 16.28
SRR16705961 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 15.87
SRR16705964 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 13.51
SRR16706001 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 12.87
SRR16705952 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 12.03
SRR16705980 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 11.81
SRR16705984 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 10.58
SRR16705951 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 9.81
SRR16705983 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 8.24
SRR16705963 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 6.18
SRR16706000 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 5.57
SRR16705999 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 4.24
SRR16705981 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 3.95
SRR16705998 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 3.01
SRR16705962 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 1.65
SRR16705966 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 15.54
SRR16705959 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 14.37
SRR16705988 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 12.89
SRR16705969 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 11.49
SRR16705956 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 11.34
SRR16705985 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 9.70
SRR16705958 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 6.31
SRR16705955 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 5.87
SRR16705953 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 4.99
SRR16705968 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 4.53
SRR16705954 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.74
SRR16706003 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.57
SRR16706002 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.14
SRR16705967 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 2.79
SRR16705987 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 2.77
SRR16705986 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.71
SRR23025712 Polyp not recorded not recorded not recorded - 6.45
SRR23025710 Polyp not recorded not recorded not recorded - 5.24
SRR7746667 Polyp not recorded not recorded not recorded - 4.69
SRR23025711 Polyp not recorded not recorded not recorded - 3.78
SRR7746668 Polyp not recorded not recorded not recorded - 3.02
SRR7746666 Polyp not recorded not recorded not recorded - 2.98
SRR23025713 Polyp not recorded not recorded not recorded - 2.43
SRR23025708 Polyp not recorded not recorded not recorded - 2.12
SRR7746669 Polyp not recorded not recorded not recorded - 1.81
SRR23025709 Polyp not recorded not recorded not recorded - 1.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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