Gene detail

Detailed information of OS493_034469-T1 in Lophelia pertusa

Genomic Location: scaffold_291:384834...396544
NR annotation: KAJ7376479.1, CCR4-NOT transcription complex subunit 11 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UKZ1	CCR4-NOT transcription complex subunit 11 OS=Homo sapiens OX=9606 GN=CNOT11 PE=1 SV=1
Q9CWN7	CCR4-NOT transcription complex subunit 11 OS=Mus musculus OX=10090 GN=Cnot11 PE=1 SV=1
B0BNA9	CCR4-NOT transcription complex subunit 11 OS=Rattus norvegicus OX=10116 GN=Cnot11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006694 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10155 all species →	CNOT11	CCR4-NOT transcription complex subunit 11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019312 all species →	Family	CCR4-NOT transcription complex subunit 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15975 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034469-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034469-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

43.3Max TPM

21.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.68	26.27
polyp at pH7 6	18	18	22.81	30.47
coral polyp · control treatment	16	16	25.04	37.31
coral polyp · oil and dispersant treatment	16	16	18.26	43.31
coral polyp · oil treatment	16	16	22.70	32.26
coral polyp · dispersant treatment	16	16	15.61	32.56
Polyp	10	10	21.67	40.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.86
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.24
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.67
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.