Detailed information of OS493_034486-T1 in Lophelia pertusa

Genomic Location: scaffold_292:186956...201772
NR annotation: KAJ7370043.1, hypothetical protein OS493_034486 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q801S2Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis OX=8355 GN=sdha-b PE=2 SV=1
Q6PA58Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis OX=8355 GN=sdha-a PE=2 SV=1
Q0QF01Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Sus scrofa OX=9823 GN=SDHA PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003920 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00415
all species →		RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF00890
all species →		FAD_binding_2FAD binding domainFamilyInterproscan
PF13540
all species →		RCC1_2Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036188
all species →		Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR030664
all species →		FamilyFAD-dependent oxidoreductase SdhA/FrdA/AprAInterproscan
IPR000408
all species →		RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR003953
all species →		DomainFAD-dependent oxidoreductase 2, FAD binding domainInterproscan
IPR003952
all species →		Binding_siteFumarate reductase/succinate dehydrogenase, FAD-binding siteInterproscan
IPR009091
all species →		Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11632
all species →		SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000104
all species →		Molecular Functionsuccinate dehydrogenase activityInterproscan
GO:0005749
all species →		Cellular Componentobsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)Interproscan
GO:0006121
all species →		Biological Processmitochondrial electron transport, succinate to ubiquinoneInterproscan
GO:0008177
all species →		Molecular Functionsuccinate dehydrogenase (quinone) activityInterproscan
GO:0009055
all species →		Molecular Functionelectron transfer activityInterproscan
GO:0050660
all species →		Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0016491
all species →		Molecular Functionoxidoreductase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_034486-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_034486-T1 global co-expression network
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