Gene detail

Detailed information of OS493_034546-T1 in Lophelia pertusa

Genomic Location: scaffold_294:67194...78682
NR annotation: KAJ7321492.1, Ceramide synthase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27544	Ceramide synthase 1 OS=Homo sapiens OX=9606 GN=CERS1 PE=1 SV=1
P27545	Ceramide synthase 1 OS=Mus musculus OX=10090 GN=Cers1 PE=1 SV=1
Q9XWE9	Probable ceramide synthase lagr-1 OS=Caenorhabditis elegans OX=6239 GN=lagr-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003090 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03798 all species →	TRAM_LAG1_CLN8	TLC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006634 all species →	Domain	TRAM/LAG1/CLN8 homology domain	Interproscan
IPR016439 all species →	Family	Sphingosine N-acyltransferase Lag1/Lac1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12560 all species →	LONGEVITY ASSURANCE FACTOR 1 LAG1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0050291 all species →	Molecular Function	sphingosine N-acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04710	CERS1, LASS1; sphingoid base N-stearoyltransferase	EC:2.3.1.299	Sphingolipid signaling pathway	ko04071	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034546-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

23.4Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.95	15.57
polyp at pH7 6	18	16	8.51	18.13
coral polyp · control treatment	16	16	11.69	23.42
coral polyp · oil and dispersant treatment	16	16	11.34	18.34
coral polyp · oil treatment	16	16	9.74	17.77
coral polyp · dispersant treatment	16	16	12.40	19.05
Polyp	10	9	3.87	7.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.