Detailed information of OS493_034608-T1 in Lophelia pertusa

Genomic Location: scaffold_295:373998...375271
NR annotation: KAJ7388970.1, chromosome attachment to the nuclear envelope [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NAG6Ankyrin repeat and LEM domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKLE1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005492 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796
all species →		Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR034998
all species →		FamilyAnkyrin repeat and LEM domain-containing protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46427
all species →		ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000712
all species →		Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0004519
all species →		Molecular Functionendonuclease activityInterproscan
GO:0004520
all species →		Molecular FunctionDNA endonuclease activityInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_034608-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_034608-T1 global co-expression network
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