Gene detail

Detailed information of OS493_034734-T1 in Lophelia pertusa

Genomic Location: scaffold_298:53955...59217
NR annotation: KAJ7370002.1, hypothetical protein OS493_034734 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001933 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01117 all species →	Aerolysin	Aerolysin toxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005830 all species →	Family	Aerolysin	Interproscan
IPR053280 all species →	Family	Aerolysin-like pore-forming protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34007 all species →	AEROLYSIN-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034734-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034734-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

92TPM > 0

7Conditions

75.6Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.65	55.77
polyp at pH7 6	18	15	15.55	75.64
coral polyp · control treatment	16	13	3.87	29.72
coral polyp · oil and dispersant treatment	16	12	4.10	23.06
coral polyp · oil treatment	16	13	5.61	25.34
coral polyp · dispersant treatment	16	13	4.34	27.37
Polyp	10	8	0.90	3.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.14
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.84
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.