Gene detail

Detailed information of OS493_034777-T1 in Lophelia pertusa

Genomic Location: scaffold_299:119617...135340
NR annotation: KAJ7351873.1, hypothetical protein OS493_034777 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_034777-T1

ATGGAGCTACACTGTGTTCGTCTACAGCACGATTTGAATTCTTCTACAACATCTTGGACGAAGAACCTCCGAGAAGGAACATCGACCTTCGACATTGGCGGTTGTCAGCAACCAGCGAAACATTGCAATGGATATAGTCCGCATCTCTTTGAGGACAAGGGGAACATGTGTTTGAATGGAGATCCGTCCTCACCGACGAATACGCCAGAATTATTCACGGATGGGGTGAATTCGCCAAGAAATGGAAGCCGCCACAAACTCGTCGCTTTAGGGAATGGCCTAGTTGATTATGACAGGATACCTTGCAATGGCTTTCATCATCAAACGGTTGCGTATGAAATGAGCCCTGAAAAGACTGTCGGGCATGGCAGACCAAGATCTCGGTCAGACCAAGAGGGAGTGATGGGTTCACACCCCAAAAGGATGCATTCATGGAGTGGTCCTGTATCCGAAAATGAAGATAGATTCAACCATGGGTCTCAGTACATCATGACACCCGAGAACTCGAGACACCAAACTGATGTGGAGATTGAAATGCAAAGACATGGTTTGGGCACATCATGTGGAATCGATTCTCTAGAGATTCGTAAGCCTTGTTTGCAGCTGGGTCGTCATCCATCTTTAGAGGTCTATTTGGGGTCCAAAAAAGGCATCACGGATACAATCCCTCGAAGACGGTCGGCCGAATATCATGTCAAGTATCCGTCAAGTCATTCAGCGTCACATACTAAAAACAGTGTTCCCTTGAAACCGAAAGTGCATTTCGCCATTCAAGGGACGTCTGTGAGGAGCCGTTGTGAAAACGAAGCTTTGTCCAGCTATGAATCAAACTCCAGTCTGAATGGGTGGCACCATGTCTCAGAAGTGCCTCTTGAAGACGAAACACAAAGCGAAGACCTTCAACAAAAGATTATTTATGTGTTAACAACGCATGGAGCAATGGAAGCCTTAGACATTGTCAAGGCTGTGGGTCGTGGGACAAGGAATGAAGTGAACCAGTCTCTATTCTCGCTTCATAACAGAGGTCTTGTTAGTGTTGTTCGTACGAGTGATGGCTCTTCCACCGTGTGGACTTTAAATGGGCAGCTTGGTCTTGATAGACGAGCAAGTCCGGGCGTTATTGGTGGAGAAAGGAACAACGAGAAATCTTTTGGAAGAAGTAATCATGAAGAGTTCCATGTACATCTATGGGGGCATTCCTCCGCCGGCGCTTACGATAATAGGCCAAAGAAACAATCTTGTGCTGTTGATGGCGTGAAGCCATGGATGCGATCCAATAGTCATGGTCCTTCTTCAGATGAAAGAAATGCGTGGTTTTACTGCAAATTGTGTCGAGTTTCACTTGTGTCGGAGGCACAATACGAAGAGCACCTTCGCAGCACAAAACATCAAAACAAAGTAGCAAAGTTCAGTGCTATTCCGTACAAGAAGTTCTGCGAGTGTTGCAAGGTTCACTTGAATTCTGAATCACAAGCCAAAGAGCACTTCAGCAGTGGTAGACACGAACAAACTATGGCCAAGTCTCAAAAGGCGCCACCACAACAACATCTTCCGTTGATCACCACTCCTGAGGAATTCATCCCGCAGAGAAGCACAAACACACAGCCGTACGACTATCAACTGGAGTTGTACAGCAAGGCAATGAAGACAAATTCAGTGTGCTTTCTTCCAACTGGAACGGGCAAAACATTGGTGGCTTCCCTTATCATTGGACACATGCTCAGGTTGAATCCATCTCGGCAAGTGGTGTTCCTAGTTGATCGAGTTCTCCTTGTTCTCCAGCAAAGTGACTATCTTAGAAAGGAGCTGGCGCATATGCGAGTCGCGGATGAACGCGGTTCTTTCAAAGGTACCAGGCCTATTCGCATCGGTGCGGTCTGTGGTGAAATGAGGAAACTGGAAGGAAATGCTCGCATCTATGAACAAGATGTTCTGATCATAACCGCCGACTGCTATAGGAATCATCTGAATAACGGAACGCTTCGCTTTGATGACGTATCGCTGATAGTTCTTGACGAAGCACATCACTGTAACAAGGACCACCCTTACAACGTCATCATACGGGACTTTTATCTCCGGGAAGATGCGCTTCTGGGACATCGACCCAAAATCCTGGGACTCACAGAATCTCCAGCCGGAGAAATCTCACTGGACAAAACAACCAAGAGACTACAGAGGCTGTTAGGAAATTTAGATGAAGCAAACCTGTTGGTTGTCACAAGGAATGTCCAAGAATTGGACGAGAAGACCAATAGGGCTCCTCCTGATTGCATCTTAGCTTCATACACAAGCTCTGAACACGAGCTGATGGAAGTTCTTGTGGAATACATCACCAAAGCATTCAACATGGCCGTGCGACTTAGCGAGATGAAGGATTACAAAGACATATTTCAACCGTCATCCGGTGGGCTATTCAGCATCGACGACATCCACCCAGTTCTTGGCGTGATTGATAACATTTTACTTTCACACCCTGAAGCTAACGCCCTGTGCTCGTTGCTGCATTTTCAGCGGATCTGCGAGGCTGTGTGCACGCTTCAGGAATGTGGGGAGCAAATAGCATTTTATCAGATGGCAGAGCTAGGAAATGACAAGTGTCCCCATGGGTTTCATTGGGCAGAGAGTGTGGCTCTTCCCTGCAGCAAAGTCAGGTCATATTTGGATCATTATCTCACGAAAGAGGCTTGCCATGCATGGCCCCCTGTGCCTAATTCTGGAGCAGACCAACTGATTAAACGGTTATTGAACATAAATTGGACTGGAACGAGCGGTCGCGACAATTGCTTGGTCCTGGTGCTAGTCAAGCGACCACGTACAGCACGGTACTTGGCTGAATATCTTTCAAACTGTGAGGAGCTGTTGTTACGCCGTGTAGAGACCACGTTCATTGCAGGGCATGAAAGCGAATCAGCGGATGAAGGAATGTCTTTTCCCACGCAAAGAGAGGTTATCTCAAAGATTCGCGAAGGGTACTATCCAATTGTCGTTACCTCAAGCTTGGCCGAGGAAGGCCTGGACCTCCCAATGTCTAACATGGTGATTCAAATGGATCCGTCAAACTCGGTCTTAGCTCTCGCGCAAATACGCGGCCGAGCGCCTCTGAACGAGGCCAGGTTTGTTGCCATCTGTAGAAACGATGAACAGGCCAAGAAAATTGATGATTTGTTGAGACGGGAAGAAAACATGAAGCGTTCGGCGAGGCTCATAAACGGGTTATAA

Transcript

OS493_034777-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4RKC3	Dicer-like protein 1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 PE=3 SV=2
Q2U6C4	Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2
Q9SP32	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR042371 all species →	Domain	Z-binding domain	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003726 all species →	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10742	DNA2; DNA replication ATP-dependent helicase/nuclease Dna2	EC:5.6.2.3 EC:3.1.-.-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_034777-T1 global co-expression network