Gene detail

Detailed information of OS493_034785-T1 in Lophelia pertusa

Genomic Location: scaffold_299:185277...187841
NR annotation: KAJ7351879.1, hypothetical protein OS493_034785 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0DAE4	Glutaredoxin-C8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC8 PE=2 SV=2
Q32L67	Glutaredoxin-2, mitochondrial OS=Bos taurus OX=9913 GN=GLRX2 PE=2 SV=1
Q5RC53	Glutaredoxin-2, mitochondrial OS=Pongo abelii OX=9601 GN=GLRX2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002147 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00462 all species →	Glutaredoxin	Glutaredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR014025 all species →	Domain	Glutaredoxin subgroup	Interproscan
IPR011899 all species →	Domain	Glutaredoxin, eukaryotic/virial	Interproscan
IPR011767 all species →	Active_site	Glutaredoxin active site	Interproscan
IPR002109 all species →	Domain	Glutaredoxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45694 all species →	GLUTAREDOXIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015038 all species →	Molecular Function	glutathione disulfide oxidoreductase activity	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03676	grxC, GLRX, GLRX2; glutaredoxin 3	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034785-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

605.3Max TPM

211.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	191.11	277.72
polyp at pH7 6	18	18	193.80	303.06
coral polyp · control treatment	16	16	227.72	353.16
coral polyp · oil and dispersant treatment	16	16	297.70	605.31
coral polyp · oil treatment	16	16	226.53	372.57
coral polyp · dispersant treatment	16	16	162.24	238.00
Polyp	10	10	166.67	247.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	277.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	271.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	228.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	224.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	222.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	218.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	213.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	213.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	213.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	204.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	178.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	166.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	165.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	129.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	127.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	303.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	298.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	249.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	238.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	233.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	229.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	193.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	190.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	187.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	175.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	165.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	163.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	161.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	158.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	147.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	353.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	291.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	286.99
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	262.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	259.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	242.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	236.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	220.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	216.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	213.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	211.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	185.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	170.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	168.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	165.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	160.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	605.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	499.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	366.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	350.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	318.09
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	299.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	291.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	259.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	246.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	244.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	244.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	224.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	215.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	204.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	372.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	298.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	267.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	263.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	242.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	236.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	233.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	223.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	223.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	207.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	203.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	200.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	198.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	188.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	238.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	209.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	194.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	155.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	153.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	247.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	233.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	203.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	170.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	146.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	145.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	142.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	136.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	128.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	112.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.