Gene detail

Detailed information of OS493_034786-T1 in Lophelia pertusa

Genomic Location: scaffold_299:188163...189142
NR annotation: KAJ7351880.1, hypothetical protein OS493_034786 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8LFQ6	Glutaredoxin-C4 OS=Arabidopsis thaliana OX=3702 GN=GRXC4 PE=2 SV=2
O81187	Glutaredoxin OS=Vernicia fordii OX=73154 PE=3 SV=1
P55143	Glutaredoxin OS=Ricinus communis OX=3988 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002147 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00462 all species →	Glutaredoxin	Glutaredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR002109 all species →	Domain	Glutaredoxin	Interproscan
IPR011899 all species →	Domain	Glutaredoxin, eukaryotic/virial	Interproscan
IPR014025 all species →	Domain	Glutaredoxin subgroup	Interproscan
IPR011767 all species →	Active_site	Glutaredoxin active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45694 all species →	GLUTAREDOXIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015038 all species →	Molecular Function	glutathione disulfide oxidoreductase activity	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03676	grxC, GLRX, GLRX2; glutaredoxin 3	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034786-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

5,737.5Max TPM

1,043.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	389.39	703.92
polyp at pH7 6	18	18	546.68	772.79
coral polyp · control treatment	16	16	985.49	3,907.93
coral polyp · oil and dispersant treatment	16	16	2,455.30	5,737.53
coral polyp · oil treatment	16	16	861.95	1,824.12
coral polyp · dispersant treatment	16	16	931.78	2,797.14
Polyp	10	10	1,421.08	4,961.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	703.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	687.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	509.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	480.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	422.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	405.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	383.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	383.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	360.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	349.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	313.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	312.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	311.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	309.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	282.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	281.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	262.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	248.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	772.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	748.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	746.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	722.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	694.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	690.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	682.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	556.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	533.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	530.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	480.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	435.15
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	384.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	380.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	375.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	371.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	370.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	361.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,907.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,792.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,433.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,248.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,095.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	982.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	921.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	803.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	790.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	642.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	640.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	629.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	279.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	276.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	231.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,737.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,429.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,867.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,764.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,041.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,840.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,723.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,668.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,255.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,628.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,540.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,207.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,113.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,084.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	948.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	432.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,824.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,540.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,203.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,138.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,128.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,044.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,020.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	739.36
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	713.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	617.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	572.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	547.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	542.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	488.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	351.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	319.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,797.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,593.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,331.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,046.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	876.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	799.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	766.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	739.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	739.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	637.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	607.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	514.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	435.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	413.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	396.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	211.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4,961.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3,368.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2,212.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	928.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	922.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	708.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	452.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	253.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	208.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	193.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.