Gene detail

Detailed information of OS493_034819-T1 in Lophelia pertusa

Genomic Location: scaffold_300:156936...176289
NR annotation: KAJ7321466.1, hypothetical protein OS493_034819 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_034819-T1

ATGTACTCTGAGTGGGTTTCTCTGCGGAACACGCTACAACGTGACCGTAATAACAGGAGCGTTCTGCACAACTTTCCACCTAACGTGGGAAGGGATGTGGCACACACGGTCGTGAAGACTCTCGTTCAAGCTGGCAGTCAAGAACACATGTCGCTTCGCACAGAGAGGGAGGTTGACTGGGTTATGGAGGTACTGTGTTATGGCTTGACGCTTCAAATGACGGACAGCGATGGCGAGATCGTGAAAGGCTGTGTTACGATATACTTAGACTGGATCTCAATCTTGTCAAATCCCAAGAAAGCAATTCCCGAACCGCTGCTAAAGGCGCCGGAGAAATACGCGCAAGAAATGTTTCAGCACTTTCGGAACCTTTTCGTGCGACGAGAGGAAGGTAATCTCGCGTTGCAAGCTTCTTTATGTATCAGGGTACTGCAAATGATTCAAGCTACAGCATCAGAGGCTAAGATGTCGCCCTTGACGTGGGAAGCGCTGCTCAAGTTTTTGATGATTATTAACGATATGCTTCTTTCACCGCCAAACATGTCAGGAGGTCTCGCAGAACACTTGTGTGACAAATTGATCAGTGTGCTGTTTGAAGTATGGTTGCATGCCAGCTGTCATCATTTTCCTGCACCCTCAATGTGGAAGACCCTGCATGAGCTTTGTGCGTCATGGCGGCATCACAATTCCATGATTGATTATTGGAGCAGAACATCCTTCGCTCTCACTAGAAGAGTAATTCAGTATATGTATGGTCCCAGCTTCCCTGTTCCTCCATTGCCAACCAGAAAGAGCGACGTCCGACTGCCAGCTAATTTAGGTGACGAGTGCCTCATTCAGTGCTGGTTCAGGATTCTTCATATCATTGGGAACCCTGTGGAACTCTGCAAGAAGGAAATCATTAGCGATACTCCGAAATTCAAAGAGTTTGCATTGTCAAATGAAGAAGTGATCTCGCCAGCAGCTCATCCTTGCTTGAAGATACTTCCACAGAACTTCTTGCAAGCAATGAAAGGTGCCGCAGTCCTTGTAAATGCTTTTCTTGCCATTACGACAACTGTGGATGAACCAGTGAAACACACACCAATCCCGGCGCCGACAAAAACTGCAAGTCCTCCACCAGCCAAGAAACGCGATCAGAAAGCCTTGAGTATAGGTGTGGCATTGGGTCTAAGCGATGCCACTGGATTGATAATGAGATCCCAAACAATGCCATCTAGAGCCAGTAGTGGTACCTCGTCCACTGGGCTGCCGCAGTTAGACTTTTTCCATGCCGAACTATCAAGCATTCAGTCTGCATCATTTTTGTTTCCCAGATCCCCCACGTCTGACACTCATAAACCATCAGGGGACAGTGTACTCCATTTGTTTGGAGCCTGGCTTTTCGAGGCAATATTTGCAAAGCTGGACATGACAGCAAATTTCAAGGCTCTTGGAAAGATATATGAAGGCTTTGTTACAAATTCTGTCCAGGTTGAAATTTCAGGAGGGGGCAAAACAGGTCTTGAGAAGGCTGGTCACACCATGGACAGTAAATTTGAGCCAGGCCGGGCTGAAGCGTATGGTGCCCTGTGCCGCATCTTTTGTAGTCATCGCTCAGGTCAAGAGCTCCGACCTGTGTACCTTTCAAGGTTTTATTTAGCTTTGGCAATTGGATTGTTGTACTCAGAGTCCTGTACTGGTCATGTGCTATGCAGCATATTACTGAACTCAGCTGATCTGTTGAGAGTGGATCTGCAAGGGGTGCAAGTGTTGTTACCACATCTCGTCACTGCTCTAGAGGCTGTGCTGCCAAGAAATGATGTACAGATAAGGTGCAATGTGTCTACTACTGAACTTCGCAGATCAGCCATCCACCTTCTGTTATCTATGCTTTGCTTACCACTGCACTTTCAGGATCTTGCTATAAAAGACATGACAGCAGCGTGGCGGAAGAAGCACGCTGGTGGACAGAGCAGTGATGAACAGCAGTCACTAACATTCATCGCCTTGAAGCCCCGACTCATACGGCTGCTGCTGGAAGCTCTTCAGTGTGAATCTGACTCATTCAATGTGCAGATATTGTTGGGAGGTGTCTCTCTGCTGATTCAAGACAGTGAGATTGCAGAGTCCCTTGGAGTCTCCTCTCCTACGCAAGCCGAAACTCCTGTAAGGGCGAGTGATCGCTTACAGGCTTCTCAGGACAACCGGCGTCGTGCCAGCACCGGTAGCAGCACAGTATCTGACACAGGCAGTACTGGTGAAATGGACAACGACAACAGGATTCAGTACAATCACTCTTTTAATAAGTCTTATGACCTATCAACAGTGCAAGGGCTGTTTGTACAGTTGACGCATCTGTTGTGTAACAAGCTGGTCGTGATCAGGAGCAGTCGTTGGAAGTCTGATGTTCACATCACTTTAGCTGCTTTTGAGCTGCTGTCTGGTCTAGCACAACTTAGCATGAACCATCTGGACCAAGCCGAGTGTAAAAGTACAATCCACTGGTTGTGTGACTATGTCTCGTACCAAGCCAACAAAAAGGCAACACATCACTCACGTGACCTTCACTCTATGATTGTTGCCGCTTTCAGCTGCATTCAGTCCTGGATAATGTCACACCCATGGCTCTTGGACAGCCAGGGCTGCTTGCATGTCGTTATGGAAGTGGTAGAGCTTGGAATTTCAGGAAGCAAATCCAGGGAAATACCAAGAGATCCTCAGCTTGAAACAGACTCTGGCCCTCGGTTGAAAGGTAACAAAGAATTAAAACCTGTTTCATTCCGGGTACGAGAAGCTGCTGAAGGATTGTTGACTGTTATCATGGAACACTTGGGAGCGTTTCCTTCACCGTGCGGTCCAGCTGCGTTATCTTCACTGTTAGATGAAGAATGGGTTCTGAGTCATGTTCAATCAAATGATGCCTCAACAAAGACACGTCGTAAGTTCCAGTATTATGTGATTCAGGATAGCAGTATCGTAATGGGATTGTTGGAAGAATCTCTCAAATCCAAAGATCCGCTGCCGACCTTATCATCGGTTGTTCGTGGACCCGCCGGTCGACTTGATACAAGCTCATCTAAAGGACCCAGGCCGCCCTCTCCAGACAAGACCCAGCCTCGTCCACCGCCGAACATTAAACACAGGGCCTTTCCGGAGGCTGTTGATGCGGTGCCTCTTACTAAGGCAGACCGCAGTATACCAGAACTAGATGACATTCTGGATGCCAAACTCAGTGAGGTACAAGACCACATGCGGACACTAATGCAGAAACAGCTGGAACATGAAACAGTGGCTCAGGCCAAGTTGGACGAGGAAGAAACCCGCGTTACGTTCCCGGACAAAGAGACGGAAATTAGACCACCCCGGCCTTGCCAGGAGTTTAACCCATCGCGTTTGATGCTATCCCACTTTGGCTTACTGACACTCGAAGGACTGAAGGGGAACCCGTTGCGTCCATTTGAGGAGGCGAGCCTGTTGGCACTGAATTCCAGCTCAGAAGGATTCTCAACAGCTCTGAAGGAACTGGATCAGGTCGCTACACGAACTCAGGACACTGTATTGGTGTTTTACGTGAAGGCGGAACAGGGAGACGCACATGAAATAATCGAAAACCAGATCAATACCTGTAAGCATTCTAAGGCGTTCAGGGAGTTTTTGCTCTCTCTGGGATGGCCTGTTGACGTAGCCTCGCACCCGGGCTGGGCAGGAAACATCCAAGAGGCCTGGAACCGAGGCAAGAATGATGACGACACTGTCACGCTGCGTCAGCGTCTCAGTCCTTTCCAGTCCTCTCATAGCGTGTCGACCCTCACGGGCATCGAAGAACGAGACGTGTCTGGGAGCGATCGCGAGAGTCCTGATATCGAAGCATCGAGAAGCGGGAAAGATTCTCCGGCTGTAGACTCCTCTGTCACTCAACCTCCGGTGGAAAAAATCGTCGATGAAATTCTTTATTACGCAGACGTCAGCTGTGAGGTGGCTTTCATTATGCCCTCTCTGCTACCGCGTTATCAGCGGTTCCGGCACATGGTTTCACGCCCTGAGAGCTGTGAAGAGGATCTTGGGTATGTTCAGCGGAGGAGGACTCGGTCGGGCAGCACAGGGAGCATGGAAACGACTGGTAACGGCAGTGGAAGTCAGTTGGATATCAGAAGTAAGCTACCCGTCAGGCCTCGGAAGGGACGACTGCTTTCGAGGTAA

Transcript

OS493_034819-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86X10	Ral GTPase-activating protein subunit beta OS=Homo sapiens OX=9606 GN=RALGAPB PE=1 SV=1
Q8BQZ4	Ral GTPase-activating protein subunit beta OS=Mus musculus OX=10090 GN=Ralgapb PE=1 SV=2
P86410	Ral GTPase-activating protein subunit beta OS=Rattus norvegicus OX=10116 GN=Ralgapb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002628 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20412 all species →	RALGAPB_N	RALGAPB N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046859 all species →	Domain	Ral GTPase-activating protein subunit alpha/beta, N-terminal domain	Interproscan
IPR035974 all species →	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan
IPR000331 all species →	Domain	Rap/Ran-GAP domain	Interproscan
IPR039930 all species →	Family	Ral GTPase-activating protein subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21344 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0051056 all species →	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034819-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_034819-T1 global co-expression network