Gene detail

Detailed information of OS493_034866-T1 in Lophelia pertusa

Genomic Location: scaffold_301:303158...317180
NR annotation: KAJ7388938.1, hypothetical protein OS493_034866 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z218	A-type potassium channel modulatory protein DPP6 OS=Mus musculus OX=10090 GN=Dpp6 PE=1 SV=1
Q5IS50	A-type potassium channel modulatory protein DPP6 OS=Pan troglodytes OX=9598 GN=DPP6 PE=2 SV=1
P46101	A-type potassium channel modulatory protein DPP6 OS=Rattus norvegicus OX=10116 GN=Dpp6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001275 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00930 all species →	DPPIV_N	Dipeptidyl peptidase IV (DPP IV) N-terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002469 all species →	Domain	Dipeptidylpeptidase IV, N-terminal domain	Interproscan
IPR050278 all species →	Family	Serine Protease S9B/DPPIV Subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11731 all species →	PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034866-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034866-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

23.5Max TPM

7.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.05	15.50
polyp at pH7 6	18	18	9.41	15.64
coral polyp · control treatment	16	16	7.41	15.59
coral polyp · oil and dispersant treatment	16	16	6.66	23.51
coral polyp · oil treatment	16	16	7.67	13.85
coral polyp · dispersant treatment	16	16	5.46	17.79
Polyp	10	9	6.59	19.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.