Gene detail

Detailed information of OS493_034921-T1 in Lophelia pertusa

Genomic Location: scaffold_303:381767...387076
NR annotation: KAJ7376398.1, hypothetical protein OS493_034921 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NYH1	Intraflagellar transport protein 122 homolog OS=Danio rerio OX=7955 GN=ift122 PE=2 SV=1
A8WGF4	Intraflagellar transport protein 122 homolog OS=Xenopus tropicalis OX=8364 GN=ift122 PE=2 SV=1
Q6NWV3	Intraflagellar transport protein 122 homolog OS=Mus musculus OX=10090 GN=Ift122 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002779 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_034921-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039857 all species →	Family	Intraflagellar transport protein 122/121 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12764 all species →	WD REPEAT DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034921-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034921-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

170.0Max TPM

79.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	86.20	132.16
polyp at pH7 6	18	18	76.58	106.56
coral polyp · control treatment	16	16	90.77	137.53
coral polyp · oil and dispersant treatment	16	16	63.39	124.25
coral polyp · oil treatment	16	16	89.62	170.00
coral polyp · dispersant treatment	16	16	55.99	94.34
Polyp	10	10	99.26	148.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	132.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	130.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	127.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	124.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.98
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	170.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	148.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	129.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	114.83
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	112.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	112.27
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	111.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	83.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	75.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	53.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	51.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.