Gene detail

Detailed information of OS493_034982-T1 in Lophelia pertusa

Genomic Location: scaffold_306:100134...117651
NR annotation: KAJ7321409.1, hypothetical protein OS493_034982 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_034982-T1

ATGAAAGTTCTCGCTCTTCTTTTGCTAGCTGGAGTATCTCTTGCAGCTTATCCAGGTGCTCGTGACGTTCCAAAGGTACAAGACTTCAAGGACCCGCGGCTAAAAGGTTACAAACCGCTCAACACCTACACGTACCAATATGAGGCATGTGTGACCAGCGGTTTCCCGGAAACGGAGCATCGGTTTGCAGGTCTGAAGATCACGTGTGACACAGACTTCTACATCGAATCAGACACGTTGGTTTACCTCAAGATCAAAAACCCCATTCTGTATGAAGTAAATGGAACATCCCTCTGCGAATCTGATTCGCTGAAGATCTCCCCAGTCTCTGCCGAGCTCGCTCCTTTGCTTGAACGGCCAATCAAGTTTGAGTACAAGGATGGTAAGGTCGGTAGGATCTACTGCGACGATGATGAGCCGGAGTATATCTTGAACATCAAACGAGGAATTATCTCCATTATTCATCACAACTTTACGAAGCCCGAGGTTTCCACGGATGAACCGAGAATTTACAAGAACTGGGAGAATGGCGCACATGGGATGTGTGAAAACCTGTATGACGTGCGACACAATCACCTGGAGACCAACAGGATCAACGAAAACAAAGTCTCCAAAGAAATCAAAGAAGTCAAAGTCTCCAAGACGCTGAACCTAAAAAACTGTACCGGAAAACCGCGTGTATTTAGCAATGTTCCTGGAGTCCGCTGCCTCAACAAGAACTGCAGCATTATTGATGAGCCTTTGAAGATCTCCGTGTCAACCTCGTGTGACCTTTTGGGGACAGAGGACAAATTCGTGGTGAAGACGTGTAACACGAAGGGAAAGTACATCTTCGCTCCAACACAGATGAGAGGGAGTGGAACAACCATGACACAGCAATACCTGAGGTTTATGGGAGTAAAATCTGGATCAAACAGATATACTGTTCGTGGTGTGACTCCAAGGACACTTGAAATGACGCATCATGATGAGGAGAACAAACCGCTGACCGAGAAGCAAAGGACTGAGATTGTGTCGAAGGCAATGGCTCCTAGAGGCTCTACCATATGTTTACAAGGAGGAGGTCTTTGCACTCATTGCGGAGAAAATCTGGACGAGAGAACTGAAACCGAGACTGGCAGTCCCAGTACTTCGCGGTCTTGCTTTAACCACCAACCCAACAGAAAAGATGTGCAGAGACGTTTCAGAGCTAAAGAACCGTTTGCTGAACGCCGAATTCAGAGAAAAGATTTTCATTTGAAGTCCATCGGTAATTTTGGGCACAGAACACTCTACAAGCCTCTTCTGGACATCATCCGGGACACGAAGAACACTCTGGAGTTACGCGTGACAGCTGTCTACGCTTTGAGGAGAATTGCGCCTAAAATCCCACAAAAGGTACTCCCAGTGCTGTTACAGATCTTCCGCCAACCTAAGAACGATAGTGAACTGCGGATGGCTTGTTTCGTTGTCATTTGCGACTGCAAACCAGGTCCAGCGGTGTTCAACACAATTGTCAAGCATCTCAACCACGAACGCAACAATCAAGTGCGATCATTCGTGGTGTCTTACATCAAGGGGATGGCATTCTCTAAATATCCTTGTGACGAAAAGATTGCTCAAACGGCAAGGATTGCTCTTCGAATGCTCAGAAAATACAAGATGAACTTCCTGAGCTCCAAATGGCTGCACTATGGTGAATTTTCCGAGCTTCTGCAGATGGGTGGAACAGTAGATTTGCAAATGATTTCTACGCCATCGAGCTTCATTCCGAGAGCTCTCAACTCTAAAATTAACCTGCACGTCCTTGGAAAATCGCTCAATTTTGAGACTGGTGTCCGAAGTGAAGGAATTCAAGAGCTTCTCCAGCGTGTAGTAGGACCAAGAGGACATTACAGTCGCGAGAAATCTCTGTTTGGTTTGCTCAGACCAAAGCGAAACATTGATAACAGCTTATATGACAAGGAACTTCCCATCACCGAATTTGAAGAAGAGAAGGCAAAAGGCTCTTTCTACTTCAAAGTTCTTGGTAAAGAAGTGATGTACAACTATTTCACTTATGATGATGTGAGAGAGCTGATCGAAGATGGAGTCATTAGAGTTAACAACGATCTCAAGGACATGCTAAAGAAAGGTAAAAACTGGAATATGACCAAAGTATTCATTCCTTTTGAAGTGAGGTTTTATCAGCCGTCGTGTGTCGGTCTTCCTCTCAAGTTCATTCTGGAAAGCGTTTTATATCTGCGTGTGAACACCACAATCAAAGCTGAAGTTGAACCGAAGTTCTTTATTCCTCTTCCTGATCAAGTGACACTCAGCGGCAGAATGAATATCAGTGTTCACCATTCCACGTGGGGAAAAATGAAAGTTTGCTTGCCTCAACTTGAGACGGGCTGCAAGATAAAGATGAATATTAATATCGCGACAGGGCTGGGAGGCAAATTCCAGTGTAAACTCAAAGACTACAGCTACACCACAGAACTTGATCTACCACAAGAGAAACAAGATATTTTCTCCACCGAAAAACAGGGCTACACATTCCTGATGTACACAAAACCAGTTAAAGGTGTGAAGGACTTGAATTCGCTGTACAGGGTCACTGAACTGGACGGATTTGAAATCGGCGAGGTTACCGAGGTTGGAAGAAGTCATCACCACCATCGCTATGCTAACTGGACTCTGAAGGCGGGAGATGGGAAATACTTGTCAGTGAATGAACAGAATGAGCTCATCTTGAGTGAAGCGCCCACTGTCTTCAAGGTCTTCTTTATCGGAAGGAACCATCAGTTTGTCAAACTTTATGTTACTGGAAAGGGATTCGTGAAGGTTAAGCCAGACTCCAAAGGTTGTCTTGAGACTGTTGAAGACAAGCGTTACCCAAAACTTTTCAAGATCACTTACGTGAACGGCCGCCGACACATTCGCCTGGCCACCGTGGTTTTCATTTCATCCTGA

Transcript

OS493_034982-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90508	Vitellogenin-1 OS=Fundulus heteroclitus OX=8078 GN=vtg1 PE=1 SV=2
Q98893	Vitellogenin-2 OS=Fundulus heteroclitus OX=8078 PE=1 SV=1
P04114	Apolipoprotein B-100 OS=Homo sapiens OX=9606 GN=APOB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003575 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01347 all species →	Vitellogenin_N	Lipoprotein amino terminal region	Repeat	Interproscan
PF09172 all species →	Vit_open_b-sht	Vitellinogen, open beta-sheet	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015819 all species →	Homologous_superfamily	Lipid transport protein, beta-sheet shell	Interproscan
IPR001747 all species →	Domain	Vitellogenin, N-terminal	Interproscan
IPR011030 all species →	Homologous_superfamily	Lipovitellin-phosvitin complex, superhelical domain	Interproscan
IPR015816 all species →	Homologous_superfamily	Vitellinogen, beta-sheet N-terminal	Interproscan
IPR015817 all species →	Homologous_superfamily	Vitellinogen, open beta-sheet, subdomain 1	Interproscan
IPR050733 all species →	Family	Vitellogenin/Apolipophorin	Interproscan
IPR015255 all species →	Domain	Vitellinogen, open beta-sheet	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23345 all species →	VITELLOGENIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034982-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_034982-T1 global co-expression network