Gene detail

Detailed information of OS493_034987-T1 in Lophelia pertusa

Genomic Location: scaffold_306:149331...151804
NR annotation: KAJ7321414.1, E2-like conjugating enzyme atg10 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R1P4	Ubiquitin-like-conjugating enzyme ATG10 OS=Mus musculus OX=10090 GN=Atg10 PE=1 SV=1
Q9H0Y0	Ubiquitin-like-conjugating enzyme ATG10 OS=Homo sapiens OX=9606 GN=ATG10 PE=1 SV=1
Q8VZ52	Ubiquitin-like-conjugating enzyme ATG10 OS=Arabidopsis thaliana OX=3702 GN=ATG10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007197 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03987 all species →	Autophagy_act_C	Autophagocytosis associated protein, active-site domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007135 all species →	Family	Ubiquitin-like-conjugating enzyme Atg3/Atg10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14957 all species →	UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0006497 all species →	Biological Process	protein lipidation	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0019777 all species →	Molecular Function	Atg12 transferase activity	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan
GO:0019787 all species →	Molecular Function	ubiquitin-like protein transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17888	ATG10L, ATG10; ubiquitin-like-conjugating enzyme ATG10	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034987-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

78.1Max TPM

17.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.16	32.28
polyp at pH7 6	18	18	19.71	40.12
coral polyp · control treatment	16	16	17.04	43.49
coral polyp · oil and dispersant treatment	16	16	13.59	37.17
coral polyp · oil treatment	16	16	16.85	28.20
coral polyp · dispersant treatment	16	16	10.01	29.39
Polyp	10	9	28.26	78.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.92
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	78.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	54.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	50.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.