Gene detail

Detailed information of OS493_034988-T1 in Lophelia pertusa

Genomic Location: scaffold_306:155740...157357
NR annotation: KAJ7321415.1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07347 all species →	CI-B14_5a	NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009947 all species →	Family	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12485 all species →	NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0042773 all species →	Biological Process	ATP synthesis coupled electron transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03951	NDUFA7; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 7	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034988-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

257.5Max TPM

33.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.12	39.76
polyp at pH7 6	18	18	25.53	46.34
coral polyp · control treatment	16	16	54.64	257.52
coral polyp · oil and dispersant treatment	16	16	41.05	221.35
coral polyp · oil treatment	16	16	39.43	50.95
coral polyp · dispersant treatment	16	16	20.29	32.38
Polyp	10	10	34.48	56.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.41
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.34
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	257.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	221.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	56.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	44.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	35.02
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.03

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.