Gene detail

Detailed information of OS493_035041-T1 in Lophelia pertusa

Genomic Location: scaffold_307:213103...215647
NR annotation: KAJ7388894.1, hypothetical protein OS493_035041 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99KY4	Cyclin-G-associated kinase OS=Mus musculus OX=10090 GN=Gak PE=1 SV=2
P97874	Cyclin-G-associated kinase OS=Rattus norvegicus OX=10116 GN=Gak PE=1 SV=1
O14976	Cyclin-G-associated kinase OS=Homo sapiens OX=9606 GN=GAK PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004163 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_035041-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR051281 all species →	Family	Dual-specificity lipid and protein phosphatase	Interproscan
IPR029023 all species →	Domain	Tensin-type phosphatase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12305 all species →	PHOSPHATASE WITH HOMOLOGY TO TENSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0016314 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035041-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035041-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

30.1Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.36	10.18
polyp at pH7 6	18	14	6.38	13.14
coral polyp · control treatment	16	16	13.63	30.07
coral polyp · oil and dispersant treatment	16	16	14.03	22.30
coral polyp · oil treatment	16	15	7.72	14.02
coral polyp · dispersant treatment	16	16	9.19	17.04
Polyp	10	8	2.05	4.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.