Gene detail

Detailed information of OS493_035042-T1 in Lophelia pertusa

Genomic Location: scaffold_307:215890...223811
NR annotation: KAJ7388895.1, hypothetical protein OS493_035042 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99KY4	Cyclin-G-associated kinase OS=Mus musculus OX=10090 GN=Gak PE=1 SV=2
O14976	Cyclin-G-associated kinase OS=Homo sapiens OX=9606 GN=GAK PE=1 SV=2
P97874	Cyclin-G-associated kinase OS=Rattus norvegicus OX=10116 GN=Gak PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004163 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22967 all species →	SERINE/THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035612 all species →	Molecular Function	AP-2 adaptor complex binding	Interproscan
GO:0045747 all species →	Biological Process	positive regulation of Notch signaling pathway	Interproscan
GO:2000369 all species →	Biological Process	regulation of clathrin-dependent endocytosis	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035042-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035042-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

31.5Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.81	8.19
polyp at pH7 6	18	15	4.73	9.08
coral polyp · control treatment	16	16	12.20	31.50
coral polyp · oil and dispersant treatment	16	16	12.34	19.13
coral polyp · oil treatment	16	16	8.68	14.73
coral polyp · dispersant treatment	16	16	8.70	15.22
Polyp	10	10	1.98	3.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.40
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.