Gene detail

Detailed information of OS493_035056-T1 in Lophelia pertusa

Genomic Location: scaffold_307:335013...339106
NR annotation: KAJ7388909.1, GTP:AMP phosphotransferase ak3, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UIJ7	GTP:AMP phosphotransferase AK3, mitochondrial OS=Homo sapiens OX=9606 GN=AK3 PE=1 SV=4
Q5RDZ0	GTP:AMP phosphotransferase AK3, mitochondrial OS=Pongo abelii OX=9601 GN=AK3 PE=2 SV=3
Q0VCP1	Adenylate kinase 4, mitochondrial OS=Bos taurus OX=9913 GN=AK4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001674 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05191 all species →	ADK_lid	Adenylate kinase, active site lid	Domain	Interproscan
PF00406 all species →	ADK	Adenylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000850 all species →	Family	Adenylate kinase/UMP-CMP kinase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033690 all species →	Conserved_site	Adenylate kinase, conserved site	Interproscan
IPR007862 all species →	Domain	Adenylate kinase, active site lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23359 all species →	NUCLEOTIDE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0019205 all species →	Molecular Function	nucleobase-containing compound kinase activity	Interproscan
GO:0004017 all species →	Molecular Function	adenylate kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00944	AK3; nucleoside-triphosphate--adenylate kinase	EC:2.7.4.10	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035056-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

34.8Max TPM

14.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.91	28.37
polyp at pH7 6	18	16	16.19	34.79
coral polyp · control treatment	16	16	16.39	24.62
coral polyp · oil and dispersant treatment	16	15	9.48	18.82
coral polyp · oil treatment	16	16	13.79	23.66
coral polyp · dispersant treatment	16	16	14.05	23.99
Polyp	10	9	13.22	23.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.12
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.