Gene detail

Detailed information of OS493_035062-T1 in Lophelia pertusa

Genomic Location: scaffold_307:392764...397846
NR annotation: KAJ7388914.1, Ran-binding protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R4Y2	Ran-binding protein 3 OS=Pongo abelii OX=9601 GN=RANBP3 PE=2 SV=1
Q9H6Z4	Ran-binding protein 3 OS=Homo sapiens OX=9606 GN=RANBP3 PE=1 SV=1
Q4R4T9	Ran-binding protein 3 OS=Macaca fascicularis OX=9541 GN=RANBP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006081 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00638 all species →	Ran_BP1	RanBP1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR045255 all species →	Family	Ran binding protein RanBP1-like	Interproscan
IPR000156 all species →	Domain	Ran binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23138 all species →	RAN BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15304	RANBP3; Ran-binding protein 3	-	Human T-cell leukemia virus 1 infection	ko05166	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035062-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

51.0Max TPM

23.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.47	34.75
polyp at pH7 6	18	18	26.84	35.36
coral polyp · control treatment	16	16	28.47	51.03
coral polyp · oil and dispersant treatment	16	16	21.56	29.22
coral polyp · oil treatment	16	16	26.14	35.07
coral polyp · dispersant treatment	16	16	15.31	31.38
Polyp	10	10	20.22	27.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.75
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.14
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.75

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.