Gene detail

Detailed information of OS493_035087-T1 in Lophelia pertusa

Genomic Location: scaffold_308:405084...405479
NR annotation: KAJ7382437.1, Phosphoglucomutase-3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95394	Phosphoacetylglucosamine mutase OS=Homo sapiens OX=9606 GN=PGM3 PE=1 SV=1
F1RQM2	Phosphoacetylglucosamine mutase OS=Sus scrofa OX=9823 GN=PGM3 PE=1 SV=2
Q9CYR6	Phosphoacetylglucosamine mutase OS=Mus musculus OX=10090 GN=Pgm3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006726 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00408 all species →	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain	Repeat	Interproscan
PF21404 all species →	AMG1_III	Phosphoacetylglucosamine mutase AMG1, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005843 all species →	Domain	Alpha-D-phosphohexomutase, C-terminal	Interproscan
IPR049022 all species →	Domain	Phosphoacetylglucosamine mutase AMG1, domain III	Interproscan
IPR036900 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45955 all species →	PHOSPHOACETYLGLUCOSAMINE MUTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016868 all species →	Molecular Function	intramolecular phosphotransferase activity	Interproscan
GO:0071704 all species →	Biological Process	obsolete organic substance metabolic process	Interproscan
GO:0004610 all species →	Molecular Function	phosphoacetylglucosamine mutase activity	Interproscan
GO:0006048 all species →	Biological Process	UDP-N-acetylglucosamine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035087-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035087-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

107.5Max TPM

64.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	85.11	107.48
polyp at pH7 6	18	18	76.74	93.40
coral polyp · control treatment	16	16	68.55	98.08
coral polyp · oil and dispersant treatment	16	16	50.61	73.44
coral polyp · oil treatment	16	16	55.18	79.78
coral polyp · dispersant treatment	16	16	43.33	72.68
Polyp	10	10	69.04	105.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.22
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	105.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	89.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	83.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	83.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	68.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	64.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	59.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	51.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	49.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	35.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.