Gene detail

Detailed information of OS493_035089-T1 in Lophelia pertusa

Genomic Location: scaffold_308:424579...426552
NR annotation: KAJ7382439.1, hypothetical protein OS493_035089 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54098	DNA polymerase subunit gamma-1 OS=Homo sapiens OX=9606 GN=POLG PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002983 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18136 all species →	DNApol_Exo	DNA mitochondrial polymerase exonuclease domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002297 all species →	Family	DNA-directed DNA-polymerase, family A, mitochondria	Interproscan
IPR041336 all species →	Domain	DNA mitochondrial polymerase, exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10267 all species →	DNA POLYMERASE SUBUNIT GAMMA-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005760 all species →	Cellular Component	gamma DNA polymerase complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006264 all species →	Biological Process	mitochondrial DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035089-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035089-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

12.5Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.71	6.75
polyp at pH7 6	18	16	4.77	12.55
coral polyp · control treatment	16	16	4.30	9.68
coral polyp · oil and dispersant treatment	16	15	2.51	4.84
coral polyp · oil treatment	16	16	3.61	8.97
coral polyp · dispersant treatment	16	15	4.84	12.00
Polyp	10	8	1.10	3.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.36
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.