Gene detail

Detailed information of OS493_035096-T1 in Lophelia pertusa

Genomic Location: scaffold_309:84077...85805
NR annotation: KAJ7376353.1, hypothetical protein OS493_035096 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VQX4	Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster OX=7227 GN=Naprt PE=2 SV=2
Q95XX1	Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans OX=6239 GN=nprt-1 PE=3 SV=3
Q84WV8	Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=NAPRT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004037 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17956 all species →	NAPRTase_C	Nicotinate phosphoribosyltransferase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007229 all species →	Family	Nicotinate phosphoribosyltransferase family	Interproscan
IPR041619 all species →	Domain	Nicotinate phosphoribosyltransferase C-terminal domain	Interproscan
IPR036068 all species →	Homologous_superfamily	Nicotinate phosphoribosyltransferase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11098 all species →	NICOTINATE PHOSPHORIBOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004516 all species →	Molecular Function	nicotinate phosphoribosyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034355 all species →	Biological Process	NAD salvage	Interproscan
GO:0009435 all species →	Biological Process	NAD biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035096-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035096-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

20.8Max TPM

8.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.81	13.60
polyp at pH7 6	18	18	7.80	13.09
coral polyp · control treatment	16	16	12.46	17.99
coral polyp · oil and dispersant treatment	16	15	7.31	13.05
coral polyp · oil treatment	16	16	10.66	20.80
coral polyp · dispersant treatment	16	15	7.91	18.67
Polyp	10	9	8.08	15.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.26
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.94
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.