Gene detail

Detailed information of OS493_035097-T1 in Lophelia pertusa

Genomic Location: scaffold_309:92181...98960
NR annotation: KAJ7376354.1, hypothetical protein OS493_035097 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95XX1	Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans OX=6239 GN=nprt-1 PE=3 SV=3
Q84WV8	Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=NAPRT2 PE=2 SV=1
Q9VQX4	Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster OX=7227 GN=Naprt PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004085 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17767 all species →	NAPRTase_N	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007229 all species →	Family	Nicotinate phosphoribosyltransferase family	Interproscan
IPR036068 all species →	Homologous_superfamily	Nicotinate phosphoribosyltransferase-like, C-terminal	Interproscan
IPR040727 all species →	Domain	Nicotinate phosphoribosyltransferase, N-terminal domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11098 all species →	NICOTINATE PHOSPHORIBOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004516 all species →	Molecular Function	nicotinate phosphoribosyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034355 all species →	Biological Process	NAD salvage	Interproscan
GO:0009435 all species →	Biological Process	NAD biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035097-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035097-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

10.9Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.61	3.92
polyp at pH7 6	18	14	2.67	5.09
coral polyp · control treatment	16	16	4.97	8.80
coral polyp · oil and dispersant treatment	16	15	2.98	6.72
coral polyp · oil treatment	16	16	4.95	10.90
coral polyp · dispersant treatment	16	14	4.38	9.48
Polyp	10	9	2.13	5.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.48
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.