Gene detail

Detailed information of OS493_035104-T1 in Lophelia pertusa

Genomic Location: scaffold_309:162626...167520
NR annotation: KAJ7376361.1, regulation of sodium ion transport [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4KMZ8	Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1 OS=Homo sapiens OX=9606 GN=NKAIN1 PE=2 SV=3
Q9D035	Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1 OS=Mus musculus OX=10090 GN=Nkain1 PE=1 SV=2
Q5VXU1	Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2 OS=Homo sapiens OX=9606 GN=NKAIN2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008030 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05640 all species →	NKAIN	Na,K-Atpase Interacting protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008516 all species →	Family	Na,K-Atpase Interacting protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13084 all species →	T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002028 all species →	Biological Process	regulation of sodium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22735	NKAIN; sodium/potassium-transporting ATPase subunit beta-1-interacting protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035104-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

180.4Max TPM

54.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.72	54.29
polyp at pH7 6	18	17	34.13	58.72
coral polyp · control treatment	16	16	66.33	143.07
coral polyp · oil and dispersant treatment	16	16	97.12	147.01
coral polyp · oil treatment	16	16	54.92	94.24
coral polyp · dispersant treatment	16	16	65.26	180.43
Polyp	10	9	22.63	42.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	180.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	42.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	35.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.