Gene detail

Detailed information of OS493_035122-T1 in Lophelia pertusa

Genomic Location: scaffold_310:94048...97262
NR annotation: KAJ7369951.1, Forkhead box protein M1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28EM1	Forkhead box protein J2 OS=Xenopus tropicalis OX=8364 GN=foxj2 PE=2 SV=1
Q68EZ2	Forkhead box protein J2 OS=Xenopus laevis OX=8355 GN=foxj2 PE=2 SV=1
Q9UPW0	Forkhead box protein J3 OS=Homo sapiens OX=9606 GN=FOXJ3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045912 all species →	Family	Forkhead box protein J2/3-like	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46078 all species →	FORKHEAD BOX PROTEIN J2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035122-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035122-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

6.2Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.67	3.70
polyp at pH7 6	18	18	1.93	5.45
coral polyp · control treatment	16	16	2.53	5.47
coral polyp · oil and dispersant treatment	16	15	1.87	6.23
coral polyp · oil treatment	16	16	2.72	6.10
coral polyp · dispersant treatment	16	16	1.41	3.93
Polyp	10	8	0.78	1.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.91
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.