Detailed information of OS493_035142-T1 in Lophelia pertusa

Genomic Location: scaffold_310:319454...329513
NR annotation: KAJ7369971.1, Hermansky-Pudlak syndrome 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UPZ3BLOC-2 complex member HPS5 OS=Homo sapiens OX=9606 GN=HPS5 PE=1 SV=2
P59438BLOC-2 complex member HPS5 OS=Mus musculus OX=10090 GN=Hps5 PE=1 SV=2
Q177G4BLOC-2 complex member HPS5 homolog OS=Aedes aegypti OX=7159 GN=p PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003369 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_035142-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR035431
all species →		FamilyBLOC-2 complex member HPS5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23287
all species →		RUBY-EYE2-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0048066
all species →		Biological Processdevelopmental pigmentationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_035142-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_035142-T1 global co-expression network
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