Gene detail

Detailed information of OS493_035215-T1 in Lophelia pertusa

Genomic Location: scaffold_313:331659...336370
NR annotation: KAJ7388875.1, hypothetical protein OS493_035215 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002795 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19340 all species →	GCP6_N	Gamma-tubulin complex component 6 N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045818 all species →	Domain	Gamma-tubulin complex component 6, N-terminal	Interproscan

PANTHER

No PANTHER signature was detected for OS493_035215-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_035215-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035215-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035215-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

31.0Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.24	9.69
polyp at pH7 6	18	15	5.14	9.91
coral polyp · control treatment	16	16	12.30	31.01
coral polyp · oil and dispersant treatment	16	16	7.56	13.57
coral polyp · oil treatment	16	15	10.49	26.07
coral polyp · dispersant treatment	16	15	7.21	20.90
Polyp	10	9	1.81	3.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.34
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.24
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.