Gene detail

Detailed information of OS493_035262-T1 in Lophelia pertusa

Genomic Location: scaffold_315:38950...47502
NR annotation: KAJ7376337.1, hypothetical protein OS493_035262 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5EXY6	Hydroxyethylthiazole kinase OS=Salmonella agona (strain SL483) OX=454166 GN=thiM PE=3 SV=1
A9MKV9	Hydroxyethylthiazole kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=thiM PE=3 SV=2
B5FMW2	Hydroxyethylthiazole kinase OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=thiM PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010220 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02110 all species →	HK	Hydroxyethylthiazole kinase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR000417 all species →	Family	Hydroxyethylthiazole kinase	Interproscan
IPR036539 all species →	Homologous_superfamily	Cytochrome c oxidase, subunit VIIa superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_035262-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0004417 all species →	Molecular Function	hydroxyethylthiazole kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0009228 all species →	Biological Process	thiamine biosynthetic process	Interproscan
GO:0005751 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex IV	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035262-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035262-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

25.9Max TPM

5.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	11.21	21.78
polyp at pH7 6	18	14	11.70	25.93
coral polyp · control treatment	16	16	2.77	5.21
coral polyp · oil and dispersant treatment	16	13	2.19	4.52
coral polyp · oil treatment	16	15	2.31	4.94
coral polyp · dispersant treatment	16	13	1.82	4.03
Polyp	10	10	7.88	20.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.68
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.21

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.