Gene detail

Detailed information of OS493_035263-T1 in Lophelia pertusa

Genomic Location: scaffold_315:53956...54771
NR annotation: KAJ7376338.1, hypothetical protein OS493_035263 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0SE82	Hydroxyethylthiazole kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=thiM PE=3 SV=1
B0SMR8	Hydroxyethylthiazole kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481 GN=thiM PE=3 SV=1
B8DJ66	Hydroxyethylthiazole kinase OS=Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=thiM PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010220 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02110 all species →	HK	Hydroxyethylthiazole kinase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR000417 all species →	Family	Hydroxyethylthiazole kinase	Interproscan

PANTHER

No PANTHER signature was detected for OS493_035263-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0004417 all species →	Molecular Function	hydroxyethylthiazole kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0009228 all species →	Biological Process	thiamine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035263-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035263-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

88TPM > 0

7Conditions

10.3Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	3.39	10.33
polyp at pH7 6	18	11	3.13	7.03
coral polyp · control treatment	16	15	3.81	8.35
coral polyp · oil and dispersant treatment	16	15	3.12	7.67
coral polyp · oil treatment	16	15	3.41	6.72
coral polyp · dispersant treatment	16	14	1.81	5.86
Polyp	10	5	0.82	4.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.